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The "DebianMed/Meeting/Aberdeen2014" page has been changed by osallou: https://wiki.debian.org/DebianMed/Meeting/Aberdeen2014?action=diff&rev1=107&rev2=108 * Related: Installing and updating Galaxy in a contolled, isolated environment for handling sensitive data [Matúš] * Priorisation of Java-based tools [Steffen, someone else from pkg-java] * Taverna - mostly hopeless to address without cheating, we should decide how to cheat [Steffen] - * biojava [Olivier], if expected dependency packaged meanwhile + * biojava [Olivier]: fix biojava and package update of biojava3 + * libgo-perl [Olivier]: fix test bug in new release and upload new release + * package new NGS softwares [Olivier]: discosnp and mapsembler2 * Jalview refresh and prototype non-free JABAWS package (If Sasha Sherstnev agrees ;) ) * OBO-Edit [Sascha] * ... please add packages you are interested in ... @@ -117, +119 @@ * Reviews - where are we * BioConductor [Andreas? Tony?] * Data handling [Steffen] - * Future BioPerl version [Olivier] + * EDAM ontology in DebianMed packages? [ olivier ]: being able to search for Debian tools based on EDAM ontologies * note [Matus]: preliminary brainstorming on this topic has been done by László, Jon Ison, Matúš (+Steffen, Hervé, Bertrand, Kristoffer Rapacki. Notes connected to attributes to annotate are in this section of the [[https://docs.google.com/document/d/19VpzwxZdlz1K4P1q1a-WYZUtiSXwUp2nafM716dzW8I/edit?pli=1#bookmark=id.v415n1pdyfl0|CodefestOntoDoc]]) - Let's get more people on board and decide and make concrete steps in Stonehaven! * Development of bioinformatics tools registry and opportunities for synergy with Debian Med, Bio-Linux, Galaxy, Mobyle, ... [Kristoffer, Matúš] _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
