This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository dnaclust.
commit a63692921a14287a4662f4f5e4927aac1cef60ce Author: Andreas Tille <[email protected]> Date: Sat Feb 1 16:59:16 2014 +0100 Add some very basic initial packaging for dnaclust --- debian/changelog | 5 +++++ debian/compat | 1 + debian/control | 23 +++++++++++++++++++++++ debian/copyright | 11 +++++++++++ debian/rules | 23 +++++++++++++++++++++++ debian/source/format | 1 + debian/upstream | 12 ++++++++++++ debian/watch | 2 ++ 8 files changed, 78 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..2ae80aa --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +dnaclust (0.0.1-1) UNRELEASED; urgency=low + + * Initial release (Closes: #<bug>) + + -- DMPT <[email protected]> Thu, 24 May 2012 14:30:13 +0200 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..138a285 --- /dev/null +++ b/debian/control @@ -0,0 +1,23 @@ +Source: dnaclust +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 9) +Standards-Version: 3.9.5 +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/<pkg>/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/<pkg>/trunk/ +Homepage: http://dnaclust.sourceforge.net/ + +Package: dnaclust +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: tool for clustering millions of short DNA sequences + dnaclust is a tool for clustering large number of short DNA sequences. + The clusters are created in such a way that the "radius" of each + clusters is no more than the specified threshold. + . + The input sequences to be clustered should be in Fasta format. The id + of each sequence is based on the first word of the seqeunce in the Fasta + format. The first word is the prefix of the header up to the first + occurance of white space charachters in the header. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..4e27a1f --- /dev/null +++ b/debian/copyright @@ -0,0 +1,11 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: <pkg> +Source: <path_to_download> + +Files: * +Copyright: © 20xx-20yy <upstream> +License: <license> + +Files: debian/* +Copyright: © 2012 Andreas Tille <[email protected]> +License: <license> diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..58ec00b --- /dev/null +++ b/debian/rules @@ -0,0 +1,23 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 + +# some helpful variables - uncomment them if needed +# shamelessly stolen from http://jmtd.net/log/awk/ +#DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}') +#VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//') +#DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}') +#DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}') +#DEBIAN_BRANCH := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf) +#GIT_TAG := $(subst ~,_,$(VERSION)) + +# alternatively to manually set those variables you can +# include /usr/share/cdbs/1/rules/buildvars.mk +# and use what is set there. Any hint whether dh might set variables in +# a similar manner are welcome. + +%: + dh $@ + +#get-orig-source: +# . debian/get-orig-source diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/upstream b/debian/upstream new file mode 100644 index 0000000..d8b5812 --- /dev/null +++ b/debian/upstream @@ -0,0 +1,12 @@ +Reference: + Author: + Title: + Journal: + Year: + Volume: + Number: + Pages: + DOI: + PMID: + URL: + eprint: diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..3774673 --- /dev/null +++ b/debian/watch @@ -0,0 +1,2 @@ +version=3 +http://sf.net/dnaclust/dnaclust_repo_release([\d.]+)\.zip -- Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/dnaclust.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
