This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository tophat.
commit 2569fee500540104f04bbf05c85289e97d520ffa Author: Andreas Tille <[email protected]> Date: Wed Mar 19 11:53:53 2014 +0100 It was not really obvious that debian/get-orig-source was used (not mentioned in debian/rules) - do this now in a canonical way using Files-Excluded --- debian/copyright | 6 +++--- debian/get-orig-source | 22 ---------------------- debian/rules | 3 +++ 3 files changed, 6 insertions(+), 25 deletions(-) diff --git a/debian/copyright b/debian/copyright index 6d4c66e..33fc0f6 100644 --- a/debian/copyright +++ b/debian/copyright @@ -5,9 +5,9 @@ Source: http://tophat.cbcb.umd.edu/downloads/tophat-2.0.10.tar.gz Comment: Cole Trapnell wrote TopHat. TopHat is built on Bowtie, which was written by Ben Langmead and Cole Trapnell. Daehwan Kim and Geo Pertea added support - for SOLiD reads. The SeqAn-1.2 library is used in TopHat and - Bowtie and some of its sources are included in TopHat source releases; its - authors are Andreas Doring, David Weese, Tobias Rausch, and Knut Reinert. + for SOLiD reads. +Files-Excluded: + */src/SeqAn* Files: * Copyright: © 2003-2010 Cole Trapnell et al diff --git a/debian/get-orig-source b/debian/get-orig-source deleted file mode 100755 index 7d86afb..0000000 --- a/debian/get-orig-source +++ /dev/null @@ -1,22 +0,0 @@ -#!/bin/sh -# script to download and repack source package of tophat -# stripping off SeqAn which is distributed in Debian. - -PKG=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'` -mkdir -p ../tarballs -VERSION=`uscan --verbose --force-download --destdir='../tarballs/' | \ - grep "Newest version on remote site is .* local version is .*" | \ - head -n 1 | \ - sed "s/Newest version on remote site is \([-0-9.].*\),.*/\1/"` - -cd ../tarballs - -UPSTREAMNAME=tophat -UPSTREAMDIR="${UPSTREAMNAME}-${VERSION}" -tar -xzf ${UPSTREAMDIR}.tar.gz - -rm -rf ${UPSTREAMDIR}/src/SeqAn-1.3 - -GZIP="--best --no-name" tar -czf "$PKG"_"$VERSION".orig.tar.gz "${UPSTREAMDIR}" -rm -rf "${UPSTREAMDIR}" - diff --git a/debian/rules b/debian/rules index c78f8b6..cdfcc8a 100755 --- a/debian/rules +++ b/debian/rules @@ -41,3 +41,6 @@ override_dh_installman: --name='TopHat maps short sequences from spliced transcripts to whole genomes' \ --version-string="$(version)" \ $(bindir)/tophat > $(mandir)/tophat.1 + +get-orig-source: + uscan --verbose --force-download --repack --repack-compression xz -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/tophat.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
