This is an automated email from the git hooks/post-receive script. malex-guest pushed a commit to branch master in repository gmap.
commit fe772e81ee61a74ff6f418d352762346025743bb Author: Alexandre Mestiashvili <[email protected]> Date: Thu Aug 7 15:25:11 2014 +0200 push to unstable d/*.1: updated man pages --- debian/changelog | 2 +- debian/gmap.1 | 8 ++++---- debian/gmap_build.1 | 4 ++-- debian/gsnap.1 | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-) diff --git a/debian/changelog b/debian/changelog index f611144..30794c4 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,4 +1,4 @@ -gmap (2014-07-28-1) UNRELEASED; urgency=medium +gmap (2014-07-28-1) unstable; urgency=medium * Imported Upstream version 2014-07-28 diff --git a/debian/gmap.1 b/debian/gmap.1 index a750eac..5c8d36d 100644 --- a/debian/gmap.1 +++ b/debian/gmap.1 @@ -1,4 +1,4 @@ -.TH GMAP "1" "July 2014" "GMAP 2014-07-04" "User Commands" +.TH GMAP "1" "July 2014" "GMAP 2014-07-28" "User Commands" .SH NAME gmap \- Genomic Mapping and Alignment Program .SH SYNOPSIS @@ -69,11 +69,11 @@ Batch mode (default = 2) 4 see note allocate allocate 5 expand allocate allocate -Note: For a single sequence, all data structures use mmap +Note: For a single sequence, all data structures use mmap. If mmap not available and allocate not chosen, then will use fileio (very slow) .TP -Note about \fB\-\-batch\fR and offsets: Expansion of offsets can be controlled -independently by the \fB\-\-expand\-offsets\fR flag. The \fB\-\-batch\fR=\fI\,5\/\fR option is equivalent +Note about \fB\-\-batch\fR and offsets: Expansion of offsets can be controlled independently by the \fB\-\-expand\-offsets\fR flag. +The \fB\-\-batch\fR=\fI\,5\/\fR option is equivalent to \fB\-\-batch\fR=\fI\,4\/\fR plus \fB\-\-expand\-offsets\fR=\fI\,1\/\fR .TP \fB\-\-expand\-offsets\fR=\fI\,INT\/\fR diff --git a/debian/gmap_build.1 b/debian/gmap_build.1 index 59326f2..a5d3799 100644 --- a/debian/gmap_build.1 +++ b/debian/gmap_build.1 @@ -1,4 +1,4 @@ -.TH GMAP_BUILD "1" "July 2014" "GMAP 2014-07-04" "User Commands" +.TH GMAP_BUILD "1" "July 2014" "GMAP 2014-07-28" "User Commands" .SH NAME gmap_build \- create a genome database for GMAP or GSNAP .SH SYNOPSIS @@ -8,7 +8,7 @@ gmap_build \- create a genome database for GMAP or GSNAP .PP gmap_build: Builds a gmap database for a genome to be used by GMAP or GSNAP. - Part of GMAP package, version 2014\-07\-04. + Part of GMAP package, version 2014\-07\-28. Starting from version 2013-10-28, gmap_setup program is removed, now supporting only gmap_build. Moved options from gmap_setup to gmap_build. .SH OPTIONS diff --git a/debian/gsnap.1 b/debian/gsnap.1 index 17fd765..115713c 100644 --- a/debian/gsnap.1 +++ b/debian/gsnap.1 @@ -1,4 +1,4 @@ -.TH GSNAP "1" "July 2014" "GMAP 2014-07-04" "User Commands" +.TH GSNAP "1" "July 2014" "GMAP 2014-07-28" "User Commands" .SH NAME gsnap \- Genomic Short-read Nucleotide Alignment Program .SH SYNOPSIS -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/gmap.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
