Author: tille Date: 2014-08-08 11:42:55 +0000 (Fri, 08 Aug 2014) New Revision: 17637
Removed: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/tests/ Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/README.test trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control Log: Drop autopkgtest after realising that an 800MB data package would be needed to pass the test successfully and rather document how the package can be tested. Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/README.test =================================================================== --- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/README.test 2014-08-08 09:37:37 UTC (rev 17636) +++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/README.test 2014-08-08 11:42:55 UTC (rev 17637) @@ -1,11 +1,25 @@ Notes on how this package can be tested. ──────────────────────────────────────── -This package can be tested by running the provided test: +This package can be tested if you install + http://bioconductor.org/packages/release/data/annotation/html/BSgenome.Hsapiens.UCSC.hg19.html + +To simplify the installation you can use the Debian packaging which is +prepared at + + svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-bsgenome.hsapiens.ucsc.hg19/trunk/ + +and create a Debian packagage. Once you installed this data you can +run the provided test: + LC_ALL=C R --no-save <<EOT require("rtracklayer") || stop("unable to load rtracklayer package") rtracklayer:::.test() EOT -in order to confirm its integrity. +to confirm its integrity. + +Without the data package only 2 out of 7 tests will pass. + + -- Andreas Tille <[email protected]> Fri, 08 Aug 2014 13:37:40 +0200 Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog 2014-08-08 09:37:37 UTC (rev 17636) +++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/changelog 2014-08-08 11:42:55 UTC (rev 17637) @@ -1,18 +1,13 @@ -r-bioc-rtracklayer (1.24.2-1) UNRELEASED; urgency=medium +r-bioc-rtracklayer (1.24.2-1) unstable; urgency=medium - [ Martin Pitt ] - * debian/tests/control: Add missing r-cran-runit test dependency, and allow - stderr output. - - [ Andreas Tille ] * New upstream version - TODO: - Closes: #735543 ???? * Moved debian/upstream to debian/upstream/metadata - TODO: needs - svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-genomicalignments/trunk/ + * (Build-)Depends: r-bioc-genomicalignments + * Drop autopkgtest that would need 800MB data package + r-bioc-bsgenome.hsapiens.ucsc.hg19 to run successfully. + Closes: #735543 - -- Andreas Tille <[email protected]> Wed, 18 Jun 2014 11:11:50 +0200 + -- Andreas Tille <[email protected]> Fri, 08 Aug 2014 13:37:40 +0200 r-bioc-rtracklayer (1.22.0-1) unstable; urgency=low Modified: trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control =================================================================== --- trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control 2014-08-08 09:37:37 UTC (rev 17636) +++ trunk/packages/R/r-bioc-rtracklayer/trunk/debian/control 2014-08-08 11:42:55 UTC (rev 17637) @@ -2,7 +2,6 @@ Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Andreas Tille <[email protected]> Section: gnu-r -XS-Testsuite: autopkgtest Priority: optional Build-Depends: debhelper (>= 9), cdbs, _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
