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afif-guest pushed a commit to branch master
in repository kmer-tools.
commit ba5dfe455209ff126d956ad203b6c956ac2df7e4
Author: Afif Elghraoui <a...@ghraoui.name>
Date: Fri May 22 02:16:55 2015 -0700
Add/update *.install files to appropriately place files
I've used brace expansions here, but they trigger
lintian warnings and so will have to go later.
I may create different packages called kmer-common
and libkmer-common-dev to contain the current
contents of kmer and libkmer-dev, reserving kmer
to be a metapackage depending on all the
subcomponents. Header files and static libraries
for kmer have been placed in /usr/include/kmer
rather than directly in /usr/include because
many of them have generic names. However,
select headers and static libraries might
be better placed in /usr/include directly.
These are bio.h, bio++.H, libbio.a, kmer.H,
and libkmer.a. I will have to consider whether
this would cause any problems, though.
---
debian/kmer.install | 7 ++++++-
debian/libkmer-dev.install | 10 +++++++++-
debian/libmeryl-dev.install | 2 ++
debian/meryl.docs | 1 +
debian/meryl.install | 1 +
5 files changed, 19 insertions(+), 2 deletions(-)
diff --git a/debian/kmer.install b/debian/kmer.install
index effc7cb..c274d11 100644
--- a/debian/kmer.install
+++ b/debian/kmer.install
@@ -1 +1,6 @@
-installdir/bin usr
+# libutil (kazlib and its rdepends are currently not built)
+installdir/bin/mt19937ar-test usr/bin
+# libseq
+installdir/bin/{test-merStream,test-seqCache,test-seqStream} usr/bin
+# libkmer
+installdir/bin/{existDB,positionDB} usr/bin
diff --git a/debian/libkmer-dev.install b/debian/libkmer-dev.install
index 975ac36..3afe4e5 100644
--- a/debian/libkmer-dev.install
+++ b/debian/libkmer-dev.install
@@ -1 +1,9 @@
-installdir/include usr
+libutil/*.{h,H} usr/include/kmer
+libutil/libutil.a usr/include/kmer
+libutil/mt19937ar/libmt19937ar.a usr/include/kmer
+libbio/*.{h,H} usr/include/kmer
+libbio/libbio.a usr/include/kmer
+libseq/*.{h,H} usr/include/kmer
+libseq/libseq.a usr/include/kmer
+libkmer/*.{h,H} usr/include/kmer
+libkmer/libkmer.a usr/include/kmer
diff --git a/debian/libmeryl-dev.install b/debian/libmeryl-dev.install
new file mode 100644
index 0000000..afb937c
--- /dev/null
+++ b/debian/libmeryl-dev.install
@@ -0,0 +1,2 @@
+meryl/{meryl.H,libmerylguts.a} usr/include
+libmeryl/{libmeryl.H,libmeryl.a} usr/include
diff --git a/debian/meryl.docs b/debian/meryl.docs
new file mode 100644
index 0000000..59ca033
--- /dev/null
+++ b/debian/meryl.docs
@@ -0,0 +1 @@
+README.meryl
diff --git a/debian/meryl.install b/debian/meryl.install
new file mode 100644
index 0000000..ad24a26
--- /dev/null
+++ b/debian/meryl.install
@@ -0,0 +1 @@
+installdir/bin/{meryl,simple,mapMers,mapMers-depth,kmer-mask} usr/bin
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