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afif-guest pushed a change to branch upstream
in repository python-pbcore.
from 716f5d3 Imported Upstream version 1.2.1+dfsg1
new cd3bf35 Imported Upstream version 1.2.2+dfsg1
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Summary of changes:
CHANGELOG.org | 7 +
bin/dataset.py | 2 +
pbcore/__init__.py | 2 +-
pbcore/data/Makefile | 7 +
pbcore/data/datasets/__init__.py | 6 +-
pbcore/data/datasets/alignment.dataset.xml | 8 +
.../datasets/m150430_142051_Mon_p1_b25.sts.xml | 1 +
...100710482550000001823136404221563_s1_p0.sts.xml | 1 +
pbcore/data/datasets/pbalchemysim0.reference.xml | 79 +-
pbcore/data/datasets/subreadSetWithStats.xml | 1139 +++++++++++++++-
pbcore/io/FastaIO.py | 2 +-
pbcore/io/align/PacBioBamIndex.py | 83 +-
pbcore/io/dataset/DataSetIO.py | 1400 ++++++++++++++------
pbcore/io/dataset/DataSetMembers.py | 206 ++-
pbcore/io/dataset/DataSetReader.py | 233 ++--
pbcore/io/dataset/DataSetValidator.py | 53 +-
pbcore/io/dataset/DataSetWriter.py | 19 +-
pbcore/io/dataset/EntryPoints.py | 53 +-
pbcore/util/ToolRunner.py | 3 +
tests/test_pbdataset.py | 205 ++-
tests/test_pbdataset_subtypes.py | 174 ++-
21 files changed, 2996 insertions(+), 687 deletions(-)
create mode 100644 pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml
create mode 100755
pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml
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