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malex-guest pushed a change to branch master
in repository subread.
from b75636a d/changelog: new upstream version
new ea3f671 Imported Upstream version 1.4.6-p5+dfsg
new b24d4e1 Merge tag 'upstream/1.4.6-p5+dfsg'
new 18dd667 d/changelog: new upstream version 1.4.6-p5 d/rules: build
instructions for documentation d/subread.docs: install pdf d/control: add
texlive Build-Dependecies d/patches/fix_syntax.patch: partially applied by
upstream
new e381fda d/doc-base: doc-base for the documentation in the PDF
format
new fa0279e d/{control,copyright,patches/}: applied wrap-and-sort
new 1325c36 d/control: remove texlive-bibtex-extra from Build-Depends
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
debian/changelog | 6 +
debian/control | 22 +-
debian/copyright | 2 +-
debian/doc-base | 12 +
debian/patches/fix_syntax.patch | 18 +-
debian/rules | 7 +
debian/subread.docs | 1 +
doc/MDSplot.png | Bin 0 -> 22947 bytes
doc/SubreadUsersGuide.bib | 73 ++
doc/SubreadUsersGuide.tex | 1219 +++++++++++++++++++++
doc/indel.png | Bin 0 -> 108132 bytes
doc/junction.png | Bin 0 -> 172344 bytes
doc/seed-and-vote.png | Bin 0 -> 112767 bytes
doc/voom_mean_variance.png | Bin 0 -> 99213 bytes
src/HelperFunctions.c | 47 +-
src/HelperFunctions.h | 2 +-
src/core-junction.c | 24 +-
src/coverage_calc.c | 18 +-
src/makefile.version | 2 +-
src/readSummary.c | 669 ++++++-----
src/subread.h | 1 +
test/featureCounts/result/test-minimum.FC | 9 +
test/featureCounts/result/test-minimum.FC.summary | 12 +
23 files changed, 1805 insertions(+), 339 deletions(-)
create mode 100644 debian/doc-base
create mode 100644 doc/MDSplot.png
create mode 100644 doc/SubreadUsersGuide.bib
create mode 100644 doc/SubreadUsersGuide.tex
create mode 100644 doc/indel.png
create mode 100644 doc/junction.png
create mode 100644 doc/seed-and-vote.png
create mode 100644 doc/voom_mean_variance.png
create mode 100644 test/featureCounts/result/test-minimum.FC
create mode 100644 test/featureCounts/result/test-minimum.FC.summary
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