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in repository pbgenomicconsensus.
commit 1216e3c54625af5adec1f71843c66bff0d829bbf
Author: Afif Elghraoui <a...@ghraoui.name>
Date: Mon Sep 14 23:36:15 2015 -0700
Separate scripts from the python package
---
debian/patches/python-scripts | 22 ++++++++++++++++++++++
debian/patches/series | 1 +
debian/pbgenomicconsensus.install | 7 +++++++
3 files changed, 30 insertions(+)
diff --git a/debian/patches/python-scripts b/debian/patches/python-scripts
new file mode 100644
index 0000000..2fd0975
--- /dev/null
+++ b/debian/patches/python-scripts
@@ -0,0 +1,22 @@
+Description: Don't install scripts with distutils
+ They are going into a separate package, so there is no need
+ for setuptools to know about it.
+Author: Afif Elghraoui <a...@ghraoui.name>
+Forwarded: not-needed
+Last-Update: 2015-09-14
+--- pbgenomicconsensus.orig/setup.py
++++ pbgenomicconsensus/setup.py
+@@ -15,13 +15,6 @@
+ author='Pacific Biosciences',
+ author_email='dev...@pacificbiosciences.com',
+ license=open('LICENSES').read(),
+- scripts = ['bin/variantCaller.py',
+- 'bin/summarizeConsensus.py',
+- 'bin/gffToVcf.py',
+- 'bin/gffToBed.py',
+- 'bin/makePbi.py',
+- 'bin/plurality',
+- 'bin/quiver'],
+ packages = find_packages(),
+ package_data={'GenomicConsensus.quiver':
['resources/*/GenomicConsensus/*.ini']},
+ include_package_data=True,
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..65d11d4
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+python-scripts
diff --git a/debian/pbgenomicconsensus.install
b/debian/pbgenomicconsensus.install
new file mode 100644
index 0000000..b4743f7
--- /dev/null
+++ b/debian/pbgenomicconsensus.install
@@ -0,0 +1,7 @@
+bin/gffToBed.py usr/bin
+bin/gffToVcf.py usr/bin
+bin/makePbi.py usr/bin
+bin/plurality usr/bin
+bin/quiver usr/bin
+bin/summarizeConsensus.py usr/bin
+bin/variantCaller.py usr/bin
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