This is an automated email from the git hooks/post-receive script. yoh pushed a commit to annotated tag v0.1 in repository python-mne.
commit 588aba1a35fb448978872f179d479839448352fd Author: Alexandre Gramfort <[email protected]> Date: Wed Feb 2 12:20:55 2011 -0500 adding sample test raw fif dataset updating corresponding tests --- mne/fiff/tests/data/process_raw.sh | 13 +++++++++ mne/fiff/tests/data/test-ave.fif | Bin 0 -> 5546473 bytes mne/fiff/tests/data/test-cov.fif | Bin 0 -> 541025 bytes mne/fiff/tests/data/test-eve.fif | Bin 0 -> 543 bytes mne/fiff/tests/data/test.ave | 49 +++++++++++++++++++++++++++++++ mne/fiff/tests/data/test.cov | 55 +++++++++++++++++++++++++++++++++++ mne/fiff/tests/data/test_raw-eve.fif | Bin 0 -> 927 bytes mne/fiff/tests/data/test_raw.fif | Bin 0 -> 13852290 bytes mne/fiff/tests/test_evoked.py | 6 ++-- mne/fiff/tests/test_raw.py | 6 ++-- mne/tests/test_cov.py | 4 +-- mne/tests/test_epochs.py | 9 +++--- mne/tests/test_event.py | 6 ++-- 13 files changed, 129 insertions(+), 19 deletions(-) diff --git a/mne/fiff/tests/data/process_raw.sh b/mne/fiff/tests/data/process_raw.sh new file mode 100755 index 0000000..2db2d95 --- /dev/null +++ b/mne/fiff/tests/data/process_raw.sh @@ -0,0 +1,13 @@ +#!/usr/bin/env bash + +# Generate events +mne_process_raw --raw test_raw.fif \ + --eventsout test-eve.fif + +# Averaging +mne_process_raw --raw test_raw.fif --lowpass 40 --projoff \ + --saveavetag -ave --ave test.ave + +# Compute the noise covariance matrix +mne_process_raw --raw test_raw.fif --lowpass 40 --projoff \ + --savecovtag -cov --cov test.cov diff --git a/mne/fiff/tests/data/test-ave.fif b/mne/fiff/tests/data/test-ave.fif new file mode 100644 index 0000000..0ff74c8 Binary files /dev/null and b/mne/fiff/tests/data/test-ave.fif differ diff --git a/mne/fiff/tests/data/test-cov.fif b/mne/fiff/tests/data/test-cov.fif new file mode 100644 index 0000000..1a2da11 Binary files /dev/null and b/mne/fiff/tests/data/test-cov.fif differ diff --git a/mne/fiff/tests/data/test-eve.fif b/mne/fiff/tests/data/test-eve.fif new file mode 100644 index 0000000..d3cc74d Binary files /dev/null and b/mne/fiff/tests/data/test-eve.fif differ diff --git a/mne/fiff/tests/data/test.ave b/mne/fiff/tests/data/test.ave new file mode 100644 index 0000000..be6ba6a --- /dev/null +++ b/mne/fiff/tests/data/test.ave @@ -0,0 +1,49 @@ +# +# These are comments +# +average { +# +# Output files +# +# outfile test-ave.fif +# logfile test-ave.log +# eventfile test.eve +# +# Rejection values +# + gradReject 4000e-13 + magReject 4e-12 + eegReject 0e-6 + eogReject 150e-6 +# +# Category specifications +# + category { + name "Left Auditory" + event 1 + tmin -0.2 + tmax 0.5 + color 1 1 0 + } + category { + name "Right Auditory" + event 2 + tmin -0.2 + tmax 0.5 + color 1 0 0 + } + category { + name "Left visual" + event 3 + tmin -0.2 + tmax 0.5 + color 0 1 0 + } + category { + name "Right visual" + event 4 + tmin -0.2 + tmax 0.5 + color 0.5 0.8 1 + } +} diff --git a/mne/fiff/tests/data/test.cov b/mne/fiff/tests/data/test.cov new file mode 100644 index 0000000..1f9fae2 --- /dev/null +++ b/mne/fiff/tests/data/test.cov @@ -0,0 +1,55 @@ +# +# These are comments +# +cov { +# +# Output files +# + outfile sample_audvis-cov.fif + logfile sample_audvis-cov.log +# +# Rejection values +# + gradReject 4000e-13 + magReject 4e-12 + eegReject 40e-6 + eogReject 150e-6 +# +# What to include in the covariance matrix? +# + def { + name "Left Auditory" + event 1 + tmin -0.2 + tmax 0.0 + basemin -0.2 + basemax 0 + } + def { + name "Right Auditory" + event 2 + ignore 0 + tmin -0.2 + tmax 0.0 + basemin -0.2 + basemax 0 + } + def { + name "Left visual" + event 3 + ignore 0 + tmin -0.2 + tmax 0.0 + basemin -0.2 + basemax 0 + } + def { + name "Right visual" + event 4 + ignore 0 + tmin -0.2 + tmax 0.0 + basemin -0.2 + basemax 0 + } +} diff --git a/mne/fiff/tests/data/test_raw-eve.fif b/mne/fiff/tests/data/test_raw-eve.fif new file mode 100644 index 0000000..f81fd0d Binary files /dev/null and b/mne/fiff/tests/data/test_raw-eve.fif differ diff --git a/mne/fiff/tests/data/test_raw.fif b/mne/fiff/tests/data/test_raw.fif new file mode 100644 index 0000000..35d068a Binary files /dev/null and b/mne/fiff/tests/data/test_raw.fif differ diff --git a/mne/fiff/tests/test_evoked.py b/mne/fiff/tests/test_evoked.py index ba25e80..c69b55a 100644 --- a/mne/fiff/tests/test_evoked.py +++ b/mne/fiff/tests/test_evoked.py @@ -5,11 +5,9 @@ from numpy.testing import assert_array_almost_equal, assert_equal from .. import read_evoked, write_evoked -MNE_SAMPLE_DATASET_PATH = os.getenv('MNE_SAMPLE_DATASET_PATH') -fname = op.join(MNE_SAMPLE_DATASET_PATH, 'MEG', 'sample', - 'sample_audvis-ave.fif') +fname = op.join(op.dirname(__file__), 'data', 'test-ave.fif') -def test_io_cov(): +def test_io_evoked(): """Test IO for noise covariance matrices """ data = read_evoked(fname) diff --git a/mne/fiff/tests/test_raw.py b/mne/fiff/tests/test_raw.py index 42fea76..6629183 100644 --- a/mne/fiff/tests/test_raw.py +++ b/mne/fiff/tests/test_raw.py @@ -8,9 +8,7 @@ from .. import setup_read_raw, read_raw_segment_times, pick_types, \ start_writing_raw, write_raw_buffer, finish_writing_raw -MNE_SAMPLE_DATASET_PATH = os.getenv('MNE_SAMPLE_DATASET_PATH') -fname = op.join(MNE_SAMPLE_DATASET_PATH, 'MEG', 'sample', - 'sample_audvis_raw.fif') +fname = op.join(op.dirname(__file__), 'data', 'test_raw.fif') def test_io_raw(): """Test IO for raw data @@ -22,7 +20,7 @@ def test_io_raw(): meg_channels_idx = [k for k in range(nchan) if ch_names[k][:3]=='MEG'] meg_channels_idx = meg_channels_idx[:5] - data, times = read_raw_segment_times(raw, start=100, stop=115, + data, times = read_raw_segment_times(raw, start=45, stop=50, sel=meg_channels_idx) # Writing diff --git a/mne/tests/test_cov.py b/mne/tests/test_cov.py index 0bad2fb..ac86811 100644 --- a/mne/tests/test_cov.py +++ b/mne/tests/test_cov.py @@ -6,9 +6,7 @@ from numpy.testing import assert_array_almost_equal import mne from ..fiff import fiff_open -MNE_SAMPLE_DATASET_PATH = os.getenv('MNE_SAMPLE_DATASET_PATH') -fname = op.join(MNE_SAMPLE_DATASET_PATH, 'MEG', 'sample', - 'sample_audvis-cov.fif') +fname = op.join(op.dirname(__file__), '..', 'fiff', 'tests', 'data', 'test-cov.fif') def test_io_cov(): """Test IO for noise covariance matrices diff --git a/mne/tests/test_epochs.py b/mne/tests/test_epochs.py index cc67544..af5ee6b 100644 --- a/mne/tests/test_epochs.py +++ b/mne/tests/test_epochs.py @@ -8,11 +8,10 @@ import os.path as op import mne from mne import fiff -MNE_SAMPLE_DATASET_PATH = os.getenv('MNE_SAMPLE_DATASET_PATH') -raw_fname = op.join(MNE_SAMPLE_DATASET_PATH, 'MEG', 'sample', - 'sample_audvis_raw.fif') -event_name = op.join(MNE_SAMPLE_DATASET_PATH, 'MEG', 'sample', - 'sample_audvis_raw-eve.fif') +raw_fname = op.join(op.dirname(__file__), '..', 'fiff', 'tests', 'data', + 'test_raw.fif') +event_name = op.join(op.dirname(__file__), '..', 'fiff', 'tests', 'data', + 'test-eve.fif') def test_read_epochs(): diff --git a/mne/tests/test_event.py b/mne/tests/test_event.py index eaefc87..d51496a 100644 --- a/mne/tests/test_event.py +++ b/mne/tests/test_event.py @@ -5,9 +5,9 @@ from numpy.testing import assert_array_almost_equal import mne -MNE_SAMPLE_DATASET_PATH = os.getenv('MNE_SAMPLE_DATASET_PATH') -fname = op.join(MNE_SAMPLE_DATASET_PATH, 'MEG', 'sample', - 'sample_audvis_raw-eve.fif') + +fname = op.join(op.dirname(__file__), '..', 'fiff', 'tests', 'data', + 'test-eve.fif') def test_io_cov(): -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-mne.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
