This is an automated email from the git hooks/post-receive script. yoh pushed a commit to annotated tag v0.1 in repository python-mne.
commit 3bdfe3c4e7427adb0d3f5a4cf49ba6e290d2bcbf Author: Emily Ruzich <[email protected]> Date: Mon May 16 11:16:27 2011 -0400 fixing manual --- doc/source/manual/mne.rst | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/doc/source/manual/mne.rst b/doc/source/manual/mne.rst index c6a7121..7736df1 100755 --- a/doc/source/manual/mne.rst +++ b/doc/source/manual/mne.rst @@ -368,7 +368,7 @@ is modified to favor areas of significant fMRI activation. For this purpose, the fMRI activation map is thresholded first at the value defined by the ``--fmrithresh`` option to mne_do_inverse_operator or mne_inverse_operator . Thereafter, the source-covariance matrix values corresponding to -the the sites under the threshold are multiplied by INLINE_EQUATION, set +the the sites under the threshold are multiplied by :math:`f_{off}`, set by the ``--fmrioff`` option. It turns out that the fMRI weighting has a strong influence @@ -389,8 +389,8 @@ of epochs in the condition to be analyzed. In general, we have .. math:: C = C_0 / L_{eff} -where INLINE_EQUATION is the effective -number of averages. To calculate INLINE_EQUATION for +where :math:`L_{eff}` is the effective +number of averages. To calculate :math:`L_{eff}` for an arbitrary linear combination of conditions .. math:: y(t) = \sum_{i = 1}^n {w_i x_i(t)} @@ -414,7 +414,7 @@ and, therefore Instead of a weighted average, one often computes a weighted sum, a simplest case being a difference or sum of two categories. -For a difference INLINE_EQUATION and INLINE_EQUATION and +For a difference :math:`w_1 = 1` and :math:`w_2 = -1` and thus .. math:: 1 / L_{eff} = 1 / L_1 + 1 / L_2 @@ -423,8 +423,8 @@ or .. math:: L_{eff} = \frac{L_1 L_2}{L_1 + L_2} -Interestingly, the same holds for a sum, where INLINE_EQUATION. -Generalizing, for any combination of sums and differences, where INLINE_EQUATION or INLINE_EQUATION , INLINE_EQUATION, +Interestingly, the same holds for a sum, where :math:`w_1 = w_2 = 1`. +Generalizing, for any combination of sums and differences, where :math:`w_i = 1` or :math:`w_i = -1`, :math:`i = 1 \dotso n`, we have .. math:: 1 / L_{eff} = \sum_{i = 1}^n {1/{L_i}} @@ -435,7 +435,7 @@ Inverse-operator decomposition ############################## The program ``mne_inverse_operator`` calculates -the decomposition INLINE_EQUATION, described in :ref:`CHDBEHBC`. It is normally invoked from the convenience +the decomposition :math:`A = \tilde{G} R^C = U \Lambda \bar{V^T}`, described in :ref:`CHDBEHBC`. It is normally invoked from the convenience script ``mne_do_inverse_operator`` . This section describes the options to ``mne_inverse_operator`` should a user need to invoke it directly for special-purpose processing. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-mne.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
