This is an automated email from the git hooks/post-receive script. yoh pushed a commit to annotated tag v0.1 in repository python-mne.
commit bfad91060c963ef8a0106543b4cf43a7c076e45f Author: Alexandre Gramfort <[email protected]> Date: Wed Jun 8 11:23:05 2011 -0400 adding verbose option --- mne/stats/cluster_level.py | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/mne/stats/cluster_level.py b/mne/stats/cluster_level.py index ae08ae7..c1bda6c 100644 --- a/mne/stats/cluster_level.py +++ b/mne/stats/cluster_level.py @@ -125,7 +125,7 @@ def _pval_from_histogram(T, H0, tail): def permutation_cluster_test(X, stat_fun=f_oneway, threshold=1.67, n_permutations=1000, tail=0, - connectivity=None): + connectivity=None, verbose=True): """Cluster-level statistical permutation test For a list of 2d-arrays of data, e.g. power values, calculate some @@ -154,6 +154,8 @@ def permutation_cluster_test(X, stat_fun=f_oneway, threshold=1.67, Defines connectivity between features. The matrix is assumed to be symmetric and only the upper triangular half is used. Defaut is None, i.e, no connectivity. + verbose: boolean + If True print some text. Returns ------- @@ -198,6 +200,8 @@ def permutation_cluster_test(X, stat_fun=f_oneway, threshold=1.67, if len(clusters) > 0: H0 = np.zeros(n_permutations) # histogram for i_s in range(n_permutations): + if verbose: + print "Permutation %d / %d" % (i_s + 1, n_permutations) np.random.shuffle(X_full) X_shuffle_list = [X_full[s] for s in slices] T_obs_surr = stat_fun(*X_shuffle_list) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-mne.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
