This is an automated email from the git hooks/post-receive script. yoh pushed a commit to annotated tag v0.1 in repository python-mne.
commit 31a64f7aec68bb230627abb204a92392f46bd843 Author: Alexandre Gramfort <[email protected]> Date: Thu Jul 7 13:13:49 2011 +0200 DOC: capturing mayavi for doc generation --- doc/sphinxext/gen_rst.py | 7 +++++++ examples/{read_inverse.py => inverse/plot_read_inverse.py} | 9 +++------ examples/{read_bem_surfaces.py => plot_read_bem_surfaces.py} | 0 3 files changed, 10 insertions(+), 6 deletions(-) diff --git a/doc/sphinxext/gen_rst.py b/doc/sphinxext/gen_rst.py index 91cf3e6..1eea660 100755 --- a/doc/sphinxext/gen_rst.py +++ b/doc/sphinxext/gen_rst.py @@ -171,6 +171,13 @@ def generate_file_rst(fname, target_dir, src_dir, plot_gallery): plt.savefig(image_file, facecolor='black') else: plt.savefig(image_file) + + try: + from enthought.mayavi import mlab + mlab.savefig(image_file) + except Exception, e: + pass + except: print 80*'_' print '%s is not compiling:' % fname diff --git a/examples/read_inverse.py b/examples/inverse/plot_read_inverse.py similarity index 89% rename from examples/read_inverse.py rename to examples/inverse/plot_read_inverse.py index 2c71692..d7b2843 100644 --- a/examples/read_inverse.py +++ b/examples/inverse/plot_read_inverse.py @@ -9,14 +9,14 @@ Reading an inverse operator and view source space in 3D print __doc__ -import mne from mne.datasets import sample +from mne.minimum_norm import read_inverse_operator data_path = sample.data_path('.') fname = data_path fname += '/MEG/sample/sample_audvis-meg-oct-6-meg-inv.fif' -inv = mne.read_inverse_operator(fname) +inv = read_inverse_operator(fname) print "Method: %s" % inv['methods'] print "fMRI prior: %s" % inv['fmri_prior'] @@ -24,9 +24,7 @@ print "Number of sources: %s" % inv['nsource'] print "Number of channels: %s" % inv['nchan'] ############################################################################### -# Show result - -# 3D source space +# Show result on 3D source space lh_points = inv['src'][0]['rr'] lh_faces = inv['src'][0]['use_tris'] rh_points = inv['src'][1]['rr'] @@ -36,4 +34,3 @@ mlab.triangular_mesh(lh_points[:, 0], lh_points[:, 1], lh_points[:, 2], lh_faces) mlab.triangular_mesh(rh_points[:, 0], rh_points[:, 1], rh_points[:, 2], rh_faces) -mlab.show() diff --git a/examples/read_bem_surfaces.py b/examples/plot_read_bem_surfaces.py similarity index 100% rename from examples/read_bem_surfaces.py rename to examples/plot_read_bem_surfaces.py -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-mne.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
