This is an automated email from the git hooks/post-receive script. uecker-guest pushed a commit to annotated tag v0.2.09d in repository bart.
commit 67660b3f36721c4955a06c9e2a6acc2e99232520 Author: Martin Uecker <muec...@gwdg.de> Date: Sun Dec 6 14:06:58 2015 +0100 make bart matlab script look for system-wide bart --- matlab/bart.m | 18 +++++++++++++----- 1 file changed, 13 insertions(+), 5 deletions(-) diff --git a/matlab/bart.m b/matlab/bart.m index 638bec9..b26bed8 100644 --- a/matlab/bart.m +++ b/matlab/bart.m @@ -2,10 +2,18 @@ function [varargout] = bart(cmd, varargin); % BART Call BART command from Matlab. % [A B] = bart('command', X Y) call command with inputs X Y and outputs A B % -% 2014-2015 Martin Uecker <uec...@eecs.berkeley.edu> +% 2014-2015 Martin Uecker <uec...@med.uni-goettingen.de> - if isempty(getenv('TOOLBOX_PATH')) - error('Environment variable TOOLBOX_PATH is not set.'); + bart_path = getenv('TOOLBOX_PATH'); + + if isempty(bart_path) + if exist('/usr/local/bin/bart', 'file') + bart_path = '/usr/local/bin'; + elseif exist('/usr/bin/bart', 'file') + bart_path = '/usr/bin'; + else + error('Environment variable TOOLBOX_PATH is not set.'); + end end % clear the LD_LIBRARY_PATH environment variable (to work around @@ -39,12 +47,12 @@ function [varargout] = bart(cmd, varargin); if ispc % For cygwin use bash and modify paths ERR = system(['bash.exe --login -c ', ... - strrep(getenv('TOOLBOX_PATH'), filesep, '/'), ... + strrep(bart_path, filesep, '/'), ... '"', '/bart ', strrep(cmd, filesep, '/'), ' ', ... strrep(in_str, filesep, '/'), ... ' ', strrep(out_str, filesep, '/'), '"']); else - ERR = system([getenv('TOOLBOX_PATH'), '/bart ', cmd, ' ', in_str, ' ', out_str]); + ERR = system([bart_path, '/bart ', cmd, ' ', in_str, ' ', out_str]); end if ERR~=0 -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bart.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit