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commit f6f48f13f6cb6dfb877aa48c13b093deeea2a01d Author: Afif Elghraoui <[email protected]> Date: Tue Mar 8 23:57:35 2016 -0800 Add shebang lines to python scripts --- debian/patches/add-shebang-lines.patch | 108 +++++++++++++++++++++++++++++++++ debian/patches/series | 1 + 2 files changed, 109 insertions(+) diff --git a/debian/patches/add-shebang-lines.patch b/debian/patches/add-shebang-lines.patch new file mode 100644 index 0000000..1804d8d --- /dev/null +++ b/debian/patches/add-shebang-lines.patch @@ -0,0 +1,108 @@ +Description: Add shebang lines to executable scripts +Author: Afif Elghraoui <[email protected]> +Forwarded: no +Last-Update: 2015-12-20 +--- falconkit.orig/src/py_scripts/fc_consensus.py ++++ falconkit/src/py_scripts/fc_consensus.py +@@ -1,3 +1,5 @@ ++#!/usr/bin/python ++ + from falcon_kit.mains.consensus import main + import sys + +--- falconkit.orig/src/py_scripts/fc_ctg_link_analysis.py ++++ falconkit/src/py_scripts/fc_ctg_link_analysis.py +@@ -1,3 +1,5 @@ ++#!/usr/bin/python ++ + from falcon_kit.mains.ctg_link_analysis import main + import sys + +--- falconkit.orig/src/py_scripts/fc_contig_annotate.py ++++ falconkit/src/py_scripts/fc_contig_annotate.py +@@ -1,3 +1,5 @@ ++#!/usr/bin/python ++ + from falcon_kit.mains.contig_annotate import main + import sys + +--- falconkit.orig/src/py_scripts/fc_dedup_a_tigs.py ++++ falconkit/src/py_scripts/fc_dedup_a_tigs.py +@@ -1,3 +1,5 @@ ++#!/usr/bin/python ++ + from falcon_kit.mains.dedup_a_tigs import main + import sys + +--- falconkit.orig/src/py_scripts/fc_graph_to_contig.py ++++ falconkit/src/py_scripts/fc_graph_to_contig.py +@@ -1,3 +1,5 @@ ++#!/usr/bin/python ++ + from falcon_kit.mains.graph_to_contig import main + import sys + +--- falconkit.orig/src/py_scripts/fc_graph_to_utgs.py ++++ falconkit/src/py_scripts/fc_graph_to_utgs.py +@@ -1,3 +1,5 @@ ++#!/usr/bin/python ++ + from falcon_kit.mains.graph_to_utgs import main + import sys + +--- falconkit.orig/src/py_scripts/fc_ovlp_stats.py ++++ falconkit/src/py_scripts/fc_ovlp_stats.py +@@ -1,3 +1,5 @@ ++#!/usr/bin/python ++ + from falcon_kit.mains.ovlp_stats import main + import sys + +--- falconkit.orig/src/py_scripts/fc_ovlp_filter.py ++++ falconkit/src/py_scripts/fc_ovlp_filter.py +@@ -1,3 +1,5 @@ ++#!/usr/bin/python ++ + from falcon_kit.mains.ovlp_filter import main + import sys + +--- falconkit.orig/src/py_scripts/fc_actg_coordinate.py ++++ falconkit/src/py_scripts/fc_actg_coordinate.py +@@ -1,3 +1,5 @@ ++#!/usr/bin/python ++ + from falcon_kit.mains.actg_coordinate import main + import sys + +--- falconkit.orig/src/py_scripts/fc_ovlp_to_graph.py ++++ falconkit/src/py_scripts/fc_ovlp_to_graph.py +@@ -1,3 +1,5 @@ ++#!/usr/bin/python ++ + from falcon_kit.mains.ovlp_to_graph import main + import sys + +--- falconkit.orig/src/py_scripts_v0.1/redis_graph.py ++++ falconkit/src/py_scripts_v0.1/redis_graph.py +@@ -1,3 +1,5 @@ ++#!/usr/bin/python ++ + import redis + import sys + from pbcore.io import FastaReader +--- falconkit.orig/src/py_scripts_v0.1/overlapper.py ++++ falconkit/src/py_scripts_v0.1/overlapper.py +@@ -1,3 +1,5 @@ ++#!/usr/bin/python ++x + from falcon_kit import kup, falcon, DWA, get_consensus, get_alignment + from pbcore.io import FastaReader + import numpy as np +--- falconkit.orig/src/py_scripts_v0.1/falcon_dedup.py ++++ falconkit/src/py_scripts_v0.1/falcon_dedup.py +@@ -1,3 +1,5 @@ ++#!/usr/bin/python ++ + import subprocess + from pbcore.io import FastaReader + diff --git a/debian/patches/series b/debian/patches/series index e69de29..68c9b0f 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -0,0 +1 @@ +add-shebang-lines.patch -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/falconkit.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
