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tille pushed a change to branch upstream
in repository vsearch.
from 5cfd47e Imported Upstream version 1.9.10
new b2a6636 Imported Upstream version 1.10.1
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
README.md | 9 +-
configure | 20 +-
configure.ac | 2 +-
man/vsearch.1 | 171 +-
src/Makefile.am | 5 +-
src/Makefile.in | 22 +-
src/chimera.cc | 135 +-
src/eestats.cc | 337 +++
src/{sortbysize.h => eestats.h} | 2 +-
src/fasta.cc | 84 +-
src/fasta.h | 11 +
src/fastq.cc | 9 +-
src/mask.cc | 4 +
src/mergepairs.cc | 933 ++++----
src/msa.cc | 71 +-
src/pvalue.h | 4843 ---------------------------------------
src/{shuffle.cc => rerep.cc} | 72 +-
src/{sortbysize.h => rerep.h} | 2 +-
src/util.cc | 25 +-
src/vsearch.cc | 242 +-
src/vsearch.h | 13 +-
21 files changed, 1405 insertions(+), 5607 deletions(-)
create mode 100644 src/eestats.cc
copy src/{sortbysize.h => eestats.h} (99%)
delete mode 100644 src/pvalue.h
copy src/{shuffle.cc => rerep.cc} (70%)
copy src/{sortbysize.h => rerep.h} (99%)
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