This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch debian/jessie-backports in repository pbgenomicconsensus.
commit 02209fa55ba48d9dde2f7c2582044e681ea83ad7 Merge: 19d44a0 041bf6b Author: Afif Elghraoui <[email protected]> Date: Tue Mar 15 21:21:05 2016 -0700 Merge tag 'debian/2.0.0+20151210-1' into debian/jessie-backports GenomicConsensus/ResultCollector.py | 6 +- GenomicConsensus/Worker.py | 2 +- GenomicConsensus/consensus.py | 6 +- GenomicConsensus/io/utils.py | 3 +- GenomicConsensus/main.py | 121 ++++++--- GenomicConsensus/options.py | 145 +++++++---- GenomicConsensus/plurality/plurality.py | 2 +- GenomicConsensus/quiver/model.py | 2 +- GenomicConsensus/quiver/quiver.py | 7 +- GenomicConsensus/quiver/utils.py | 2 +- GenomicConsensus/reference.py | 53 ++-- GenomicConsensus/utils.py | 61 ++++- README.md | 24 +- bin/gffToBed | 209 ++++++++++++++++ bin/gffToBed.py | 141 ----------- bin/{gffToVcf.py => gffToVcf} | 94 +++++-- bin/makePbi.py | 115 --------- bin/plurality | 2 +- bin/quiver | 2 +- bin/{summarizeConsensus.py => summarizeConsensus} | 114 +++++++-- bin/{variantCaller.py => variantCaller} | 0 debian/NEWS | 12 + debian/changelog | 15 ++ debian/control | 9 +- debian/copyright | 2 +- debian/man/{gffToBed.py.1 => gffToBed.1} | 4 +- debian/man/{gffToVcf.py.1 => gffToVcf.1} | 4 +- debian/man/makePbi.py.1 | 21 -- debian/man/summarizeConsensus.1 | 15 ++ debian/man/summarizeConsensus.py.1 | 15 -- debian/patches/manpages.patch | 94 +++---- debian/patches/python-scripts | 13 +- debian/pbgenomicconsensus.install | 8 +- debian/rules | 7 +- doc/HowToQuiver.rst | 79 +++--- setup.py | 15 +- tests/cram/bad_input.t | 5 + tests/cram/extra/convert-to-bed.t | 4 +- tests/cram/extra/convert-to-vcf.t | 2 +- tests/cram/extra/coverage-bed.t | 4 +- tests/cram/extra/plurality-compressed.t | 2 +- tests/cram/extra/plurality-fluidigm.t | 2 +- tests/cram/internal/alignment_summary.t | 4 +- tests/cram/internal/quiver-compatibility.t | 4 +- tests/cram/internal/quiver-staph.t | 21 +- tests/cram/makePbi.t.off | 284 ---------------------- tests/cram/plurality-hcv.t | 2 +- tests/cram/version.t | 11 +- tests/unit/test_tool_contract.py | 82 +++++++ 49 files changed, 924 insertions(+), 927 deletions(-) diff --cc debian/changelog index 8611365,66050a6..0d80388 --- a/debian/changelog +++ b/debian/changelog @@@ -1,9 -1,18 +1,24 @@@ + pbgenomicconsensus (2.0.0+20151210-1) unstable; urgency=medium + + * Imported Upstream version 2.0.0+20151210 + (corresponds to upstream release tag "smrtanalysis-3.0.2") + * Update patches + * Revise debian/*.install file to not be so specific + * Remove manpage for nonexistent script + * Add dependency on pbcommand + * Add strict dependency on same version of backend library from same package + * Rename manpages to match executables where language extensions dropped upstream + * Add NEWS file to advise users of renamed scripts + * Use secure VCS URLs in debian/control + + -- Afif Elghraoui <[email protected]> Fri, 12 Feb 2016 00:47:38 -0800 + +pbgenomicconsensus (1.1.0-1~bpo8+1) jessie-backports; urgency=medium + + * Rebuild for jessie-backports. + + -- Afif Elghraoui <[email protected]> Mon, 07 Dec 2015 21:45:20 -0800 + pbgenomicconsensus (1.1.0-1) unstable; urgency=medium * Imported Upstream version 1.1.0 (untagged release: bee9a1f from Jun 24) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/pbgenomicconsensus.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
