This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository fastqc.
commit 93d800f7e636a5ac270e93606b57c508c386f40a Merge: cdadf23 c00d2b4 Author: Andreas Tille <[email protected]> Date: Sun Mar 20 14:08:19 2016 +0100 Merge tag 'upstream/0.11.5+dfsg' Upstream version 0.11.5+dfsg Configuration/adapter_list.txt | 49 +- Configuration/contaminant_list.txt | 364 ++--- Configuration/limits.txt | 166 +- Help/3 Analysis Modules/8 Duplicate Sequences.html | 4 +- INSTALL.txt | 278 ++-- LICENSE.txt | 1348 ++++++++-------- README.txt | 88 +- RELEASE_NOTES.txt | 1688 ++++++++++---------- Templates/header_template.html | 372 ++--- run_fastqc.bat | 2 +- .../babraham/FastQC/Analysis/AnalysisListener.java | 62 +- uk/ac/babraham/FastQC/Analysis/AnalysisRunner.java | 230 +-- uk/ac/babraham/FastQC/Analysis/OfflineRunner.java | 382 ++--- uk/ac/babraham/FastQC/Dialogs/AboutDialog.java | 142 +- .../babraham/FastQC/Dialogs/FastQCTitlePanel.java | 294 ++-- uk/ac/babraham/FastQC/Dialogs/WelcomePanel.java | 122 +- uk/ac/babraham/FastQC/FastQCApplication.java | 676 ++++---- uk/ac/babraham/FastQC/FastQCMenuBar.java | 298 ++-- .../babraham/FastQC/FileFilters/BAMFileFilter.java | 72 +- .../FastQC/FileFilters/CasavaFastQFileFilter.java | 78 +- .../FastQC/FileFilters/FastQFileFilter.java | 72 +- .../FastQC/FileFilters/GobyFileFilter.java | 72 +- .../FastQC/FileFilters/MappedBAMFileFilter.java | 72 +- .../FastQC/FileFilters/SequenceFileFilter.java | 110 +- uk/ac/babraham/FastQC/Graphs/BaseGroup.java | 442 ++--- uk/ac/babraham/FastQC/Graphs/LineGraph.java | 470 +++--- uk/ac/babraham/FastQC/Graphs/QualityBoxPlot.java | 420 ++--- uk/ac/babraham/FastQC/Graphs/TileGraph.java | 300 ++-- uk/ac/babraham/FastQC/Help/HelpSearchPanel.java | 320 ++-- uk/ac/babraham/FastQC/Modules/AdapterContent.java | 772 ++++----- .../babraham/FastQC/Modules/DuplicationLevel.java | 528 +++--- uk/ac/babraham/FastQC/Modules/GCModel/GCModel.java | 164 +- .../FastQC/Modules/GCModel/GCModelValue.java | 80 +- uk/ac/babraham/FastQC/Modules/KmerContent.java | 1160 +++++++------- uk/ac/babraham/FastQC/Modules/ModuleConfig.java | 308 ++-- uk/ac/babraham/FastQC/Modules/ModuleFactory.java | 92 +- uk/ac/babraham/FastQC/Modules/NContent.java | 330 ++-- .../FastQC/Modules/PerBaseQualityScores.java | 528 +++--- .../FastQC/Modules/PerBaseSequenceContent.java | 446 +++--- .../FastQC/Modules/PerSequenceGCContent.java | 532 +++--- .../FastQC/Modules/PerSequenceQualityScores.java | 332 ++-- .../FastQC/Modules/PerTileQualityScores.java | 718 ++++----- uk/ac/babraham/FastQC/Modules/QCModule.java | 118 +- .../FastQC/Modules/SequenceLengthDistribution.java | 480 +++--- uk/ac/babraham/FastQC/Report/stylesheet.txt | 110 +- uk/ac/babraham/FastQC/Results/ResultsPanel.java | 324 ++-- uk/ac/babraham/FastQC/Sequence/BAMFile.java | 440 ++--- .../FastQC/Sequence/Contaminant/Contaminant.java | 308 ++-- .../Sequence/Contaminant/ContaminantHit.java | 128 +- .../Sequence/Contaminant/ContaminentFinder.java | 226 +-- uk/ac/babraham/FastQC/Sequence/Fast5File.java | 178 +-- uk/ac/babraham/FastQC/Sequence/FastQFile.java | 700 ++++---- .../Sequence/QualityEncoding/PhredEncoding.java | 188 +-- uk/ac/babraham/FastQC/Sequence/Sequence.java | 152 +- .../babraham/FastQC/Sequence/SequenceFactory.java | 226 +-- uk/ac/babraham/FastQC/Sequence/SequenceFile.java | 66 +- .../FastQC/Sequence/SequenceFileGroup.java | 186 +-- .../FastQC/Sequence/SequenceFormatException.java | 56 +- .../FastQC/Statistics/NormalDistribution.java | 98 +- .../FastQC/Statistics/PearsonCorrelation.java | 210 +-- .../babraham/FastQC/Utilities/CasavaBasename.java | 270 ++-- .../FastQC/Utilities/HotColdColourGradient.java | 310 ++-- .../Utilities/MultiMemberGZIPInputStream.java | 222 +-- .../FastQC/Utilities/NameFormatException.java | 52 +- .../FastQC/Utilities/NanoporeBasename.java | 198 +-- uk/ac/babraham/FastQC/Utilities/QualityCount.java | 190 +-- uk/ac/babraham/FastQC/Utilities/RGB.java | 88 +- 67 files changed, 10263 insertions(+), 10244 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/fastqc.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
