Author: sascha-guest
Date: 2016-05-25 22:03:35 +0000 (Wed, 25 May 2016)
New Revision: 22019
Added:
trunk/packages/bowtie/trunk/debian/patches/reproducible.patch
Modified:
trunk/packages/bowtie/trunk/debian/changelog
trunk/packages/bowtie/trunk/debian/patches/series
Log:
make build reproducible
Modified: trunk/packages/bowtie/trunk/debian/changelog
===================================================================
--- trunk/packages/bowtie/trunk/debian/changelog 2016-05-25 05:51:04 UTC
(rev 22018)
+++ trunk/packages/bowtie/trunk/debian/changelog 2016-05-25 22:03:35 UTC
(rev 22019)
@@ -1,3 +1,11 @@
+bowtie (1.1.2-4) unstable; urgency=medium
+
+ * Team upload.
+ * Make build reproducible.
+ - Remove build hostname and compiler version from binary.
+
+ -- Sascha Steinbiss <sas...@steinbiss.name> Wed, 25 May 2016 22:03:08 +0000
+
bowtie (1.1.2-3) unstable; urgency=medium
* Enable building arch independent packages separately
Added: trunk/packages/bowtie/trunk/debian/patches/reproducible.patch
===================================================================
--- trunk/packages/bowtie/trunk/debian/patches/reproducible.patch
(rev 0)
+++ trunk/packages/bowtie/trunk/debian/patches/reproducible.patch
2016-05-25 22:03:35 UTC (rev 22019)
@@ -0,0 +1,77 @@
+Description: make build reproducible
+Author: Sascha Steinbiss <sas...@steinbiss.name>
+--- a/Makefile
++++ b/Makefile
+@@ -207,9 +207,9 @@
+
+ DEFS=-fno-strict-aliasing \
+ -DBOWTIE_VERSION="\"`cat VERSION`\"" \
+- -DBUILD_HOST="\"`hostname`\"" \
+- -DBUILD_TIME="\"`date`\"" \
+- -DCOMPILER_VERSION="\"`$(CXX) -v 2>&1 | tail -1`\"" \
++ -DBUILD_HOST="\"\"" \
++ -DBUILD_TIME="\"\"" \
++ -DCOMPILER_VERSION="\"\"" \
+ $(FILE_FLAGS) \
+ $(PTHREAD_DEF) \
+ $(PREF_DEF) \
+--- a/bowtie_inspect.cpp
++++ b/bowtie_inspect.cpp
+@@ -496,7 +496,7 @@
+ } else {
+ cout << "Neither 32- nor 64-bit: sizeof(void*)
= " << sizeof(void*) << endl;
+ }
+- cout << "Built on " << BUILD_HOST << endl;
++ /* cout << "Built on " << BUILD_HOST << endl;
+ cout << BUILD_TIME << endl;
+ cout << "Compiler: " << COMPILER_VERSION << endl;
+ cout << "Options: " << COMPILER_OPTIONS << endl;
+@@ -504,7 +504,7 @@
+ << sizeof(int)
+ << ", " << sizeof(long) << ", " << sizeof(long
long)
+ << ", " << sizeof(void *) << ", " <<
sizeof(size_t)
+- << ", " << sizeof(off_t) << "}" << endl;
++ << ", " << sizeof(off_t) << "}" << endl; */
+ return 0;
+ }
+
+--- a/ebwt_build.cpp
++++ b/ebwt_build.cpp
+@@ -526,7 +526,7 @@
+ } else {
+ cout << "Neither 32- nor 64-bit: sizeof(void*)
= " << sizeof(void*) << endl;
+ }
+- cout << "Built on " << BUILD_HOST << endl;
++ /* cout << "Built on " << BUILD_HOST << endl;
+ cout << BUILD_TIME << endl;
+ cout << "Compiler: " << COMPILER_VERSION << endl;
+ cout << "Options: " << COMPILER_OPTIONS << endl;
+@@ -534,7 +534,7 @@
+ << sizeof(int)
+ << ", " << sizeof(long) << ", " << sizeof(long
long)
+ << ", " << sizeof(void *) << ", " <<
sizeof(size_t)
+- << ", " << sizeof(off_t) << "}" << endl;
++ << ", " << sizeof(off_t) << "}" << endl; */
+ return 0;
+ }
+
+--- a/ebwt_search.cpp
++++ b/ebwt_search.cpp
+@@ -2837,7 +2837,7 @@
+ } else {
+ cout << "Neither 32- nor 64-bit: sizeof(void*)
= " << sizeof(void*) << endl;
+ }
+- cout << "Built on " << BUILD_HOST << endl;
++ /* cout << "Built on " << BUILD_HOST << endl;
+ cout << BUILD_TIME << endl;
+ cout << "Compiler: " << COMPILER_VERSION << endl;
+ cout << "Options: " << COMPILER_OPTIONS << endl;
+@@ -2845,7 +2845,7 @@
+ << sizeof(int)
+ << ", " << sizeof(long) << ", " << sizeof(long
long)
+ << ", " << sizeof(void *) << ", " <<
sizeof(size_t)
+- << ", " << sizeof(off_t) << "}" << endl;
++ << ", " << sizeof(off_t) << "}" << endl; */
+ return 0;
+ }
+ #ifdef CHUD_PROFILING
Modified: trunk/packages/bowtie/trunk/debian/patches/series
===================================================================
--- trunk/packages/bowtie/trunk/debian/patches/series 2016-05-25 05:51:04 UTC
(rev 22018)
+++ trunk/packages/bowtie/trunk/debian/patches/series 2016-05-25 22:03:35 UTC
(rev 22019)
@@ -11,3 +11,4 @@
ppc64el.patch
enable_arm64.patch
spelling.patch
+reproducible.patch
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