Author: tille Date: 2016-06-05 06:45:17 +0000 (Sun, 05 Jun 2016) New Revision: 22086
Modified: trunk/packages/bioperl/trunk/debian/changelog trunk/packages/bioperl/trunk/debian/control Log: cme fix dpkg-control (Needed several manual postprocessing since cme has the habit to move comments to the end of a section) Modified: trunk/packages/bioperl/trunk/debian/changelog =================================================================== --- trunk/packages/bioperl/trunk/debian/changelog 2016-06-04 20:36:38 UTC (rev 22085) +++ trunk/packages/bioperl/trunk/debian/changelog 2016-06-05 06:45:17 UTC (rev 22086) @@ -1,3 +1,10 @@ +bioperl (1.6.924-4) UNRELEASED; urgency=medium + + * cme fix dpkg-control (Needed several manual postprocessing since cme + has the habit to move comments to the end of a section) + + -- Andreas Tille <ti...@debian.org> Sun, 05 Jun 2016 08:19:44 +0200 + bioperl (1.6.924-3) unstable; urgency=medium * Fix FTBFS with perl 5.22 Modified: trunk/packages/bioperl/trunk/debian/control =================================================================== --- trunk/packages/bioperl/trunk/debian/control 2016-06-04 20:36:38 UTC (rev 22085) +++ trunk/packages/bioperl/trunk/debian/control 2016-06-05 06:45:17 UTC (rev 22086) @@ -1,117 +1,119 @@ Source: bioperl +Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> +Uploaders: Charles Plessy <ple...@debian.org>, + Steffen Moeller <moel...@debian.org>, + Andreas Tille <ti...@debian.org>, + Olivier Sallou <osal...@debian.org> Section: science Priority: optional -Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> -Uploaders: Charles Plessy <ple...@debian.org>, - Steffen Moeller <moel...@debian.org>, - Andreas Tille <ti...@debian.org>, - Olivier Sallou <osal...@debian.org> Build-Depends: debhelper (>= 9) Build-Depends-Indep: perl, # Unnecessary according to lintian, but building with sbuild shows the contrary. - libmodule-build-perl (>= 0.420000), - libio-string-perl, - libdata-stag-perl, - libtest-most-perl, + libmodule-build-perl (>= 0.420000), + libio-string-perl, + libdata-stag-perl, + libtest-most-perl, # Recommended in Build.PL (we want them to run the tests) - libace-perl, - libalgorithm-munkres-perl, - libarray-compare-perl, - libbio-asn1-entrezgene-perl, - libbio-samtools-perl, - libcgi-pm-perl | perl (<< 5.19), - libclone-perl, - libconvert-binary-c-perl, - libdbd-sqlite3-perl, - libdbd-mysql-perl, - libdbd-pg-perl, - libgd-perl, - libgraph-perl, - libgraphviz-perl, - libhtml-parser-perl, - libhtml-tableextract-perl, - liblist-moreutils-perl, - libpostscript-perl, - libset-scalar-perl, - libsoap-lite-perl, - libsort-naturally-perl, - libspreadsheet-parseexcel-perl, - libspreadsheet-writeexcel-perl, - libstorable-perl, - libsvg-perl, - libsvg-graph-perl, - libtest-pod-perl, - liburi-perl, - libxml-dom-xpath-perl, - libxml-parser-perl, - libxml-sax-perl, - libxml-sax-writer-perl, - libxml-twig-perl, - libxml-simple-perl, - libxml-writer-perl, - libxml-libxml-perl, - libwww-perl, + libace-perl, + libalgorithm-munkres-perl, + libarray-compare-perl, + libbio-asn1-entrezgene-perl, + libbio-samtools-perl, + libcgi-pm-perl | perl (<< 5.19), + libclone-perl, + libconvert-binary-c-perl, + libdbd-sqlite3-perl, + libdbd-mysql-perl, + libdbd-pg-perl, + libgd-perl, + libgraph-perl, + libgraphviz-perl, + libhtml-parser-perl, + libhtml-tableextract-perl, + liblist-moreutils-perl, + libpostscript-perl, + libset-scalar-perl, + libsoap-lite-perl, + libsort-naturally-perl, + libspreadsheet-parseexcel-perl, + libspreadsheet-writeexcel-perl, + libstorable-perl, + libsvg-perl, + libsvg-graph-perl, + libtest-pod-perl, + liburi-perl, + libxml-dom-xpath-perl, + libxml-parser-perl, + libxml-sax-perl, + libxml-sax-writer-perl, + libxml-twig-perl, + libxml-simple-perl, + libxml-writer-perl, + libxml-libxml-perl, + libwww-perl, # Needed to avoid downloading DTDs during the tests and therefore fail when network is not available: - libxml-sax-expatxs-perl -Standards-Version: 3.9.6 + libxml-sax-expatxs-perl +Standards-Version: 3.9.8 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/bioperl/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/bioperl/trunk/ Homepage: http://www.bioperl.org/ Package: bioperl Architecture: all -Depends: libbio-perl-perl ( = ${source:Version} ), ${misc:Depends}, ${perl:Depends} -Recommends: bioperl-run ( >= 1.6.0 ), +Depends: libbio-perl-perl (= ${source:Version}), + ${misc:Depends}, + ${perl:Depends} +Recommends: bioperl-run, # for the following see #650412 # most of `binary -help` outputs - perl-doc, + perl-doc, # some libraries already in libbio-perl-perl's Recommends: -# bp_biofetch_genbank_proxy - libhttp-message-perl, - libwww-perl, - libcache-cache-perl, -# bp_blast2tree - libbio-perl-run-perl, -# bp_bulk_load_gff - libdbi-perl, -# bp_chaos_plot - libgd-gd2-perl, -# bp_das_server - libapache-dbi-perl, -# bp_download_query_genbank - liburi-perl, -# bp_einfo -# liburi-perl -# libhttp-message-perl - libxml-simple-perl, -# bp_fast_load_gff -# libdbi-perl -# bp_fetch [not for local indexing] -# bp_flanks -# libhttp-message-perl -# bp_genbank2gff -# libhttp-message-perl -# libdbi-perl -# bp_genbank2gff3 - libyaml-perl, -# bp_hivq -# libhttp-message-perl -# libxml-simple-perl -# bp_meta_gff -# libdbi-perl -# bp_netinstall -# bp_pairwise_kaks -# libbio-perl-run-perl -# bp_process_wormbase - libace-perl, -# bp_query_entrez_taxa -# bp_remote_blast -# bp_revtrans-motif - liblist-moreutils-perl, -# bp_taxid4species - libxml-twig-perl, -# bp_taxonomy2tree - libset-scalar-perl +# bp_biofetch_genbank_proxy + libhttp-message-perl, + libwww-perl, + libcache-cache-perl, +# bp_blast2tree + libbio-perl-run-perl, +# bp_bulk_load_gff + libdbi-perl, +# bp_chaos_plot + libgd-gd2-perl, +# bp_das_server + libapache-dbi-perl, +# bp_download_query_genbank + liburi-perl, +# bp_einfo +# liburi-perl +# libhttp-message-perl + libxml-simple-perl, +# bp_fast_load_gff +# libdbi-perl +# bp_fetch [not for local indexing] +# bp_flanks +# libhttp-message-perl +# bp_genbank2gff +# libhttp-message-perl +# libdbi-perl +# bp_genbank2gff3 + libyaml-perl, +# bp_hivq +# libhttp-message-perl +# libxml-simple-perl +# bp_meta_gff +# libdbi-perl +# bp_netinstall +# bp_pairwise_kaks +# libbio-perl-run-perl +# bp_process_wormbase + libace-perl, +# bp_query_entrez_taxa +# bp_remote_blast +# bp_revtrans-motif + liblist-moreutils-perl, +# bp_taxid4species + libxml-twig-perl, +# bp_taxonomy2tree + libset-scalar-perl Suggests: groff-base Description: Perl tools for computational molecular biology The Bioperl project is a coordinated effort to collect computational methods @@ -127,51 +129,54 @@ The suggested package enhances the manual pages. Package: libbio-perl-perl +Architecture: all Section: perl -Architecture: all -Depends: libio-string-perl, libdata-stag-perl, ${misc:Depends}, ${perl:Depends} -Replaces: grinder (<< 0.5.3-3~) -Breaks: grinder (<< 0.5.3-3~) +Depends: libio-string-perl, + libdata-stag-perl, + ${misc:Depends}, + ${perl:Depends} # Temporary workaround as bioperl-run has not been split -Recommends: bioperl-run ( >= 1.6.0 ) | libbio-perl-run-perl ( >= 1.6.0 ), +Recommends: bioperl-run | libbio-perl-run-perl, # Recommended in Build.PL - libace-perl, - libalgorithm-munkres-perl, - libarray-compare-perl, - libbio-asn1-entrezgene-perl, - libclone-perl, - libconvert-binary-c-perl, - libdbd-sqlite3-perl, - libdbd-mysql-perl, - libdbd-pg-perl, - libgd-perl, - libgraph-perl, - libgraphviz-perl, - libhtml-parser-perl, - libhtml-tableextract-perl, - liblist-moreutils-perl, - libpostscript-perl, - libset-scalar-perl, - libsoap-lite-perl, - libsort-naturally-perl, - libspreadsheet-parseexcel-perl, - libspreadsheet-writeexcel-perl, - libstorable-perl, - libsvg-perl, - libsvg-graph-perl, - liburi-perl, - libxml-dom-xpath-perl, - libxml-parser-perl, - libxml-sax-perl, - libxml-sax-writer-perl, - libxml-simple-perl, - libxml-twig-perl, - libxml-writer-perl, - libxml-libxml-perl, - libwww-perl + libace-perl, + libalgorithm-munkres-perl, + libarray-compare-perl, + libbio-asn1-entrezgene-perl, + libclone-perl, + libconvert-binary-c-perl, + libdbd-sqlite3-perl, + libdbd-mysql-perl, + libdbd-pg-perl, + libgd-perl, + libgraph-perl, + libgraphviz-perl, + libhtml-parser-perl, + libhtml-tableextract-perl, + liblist-moreutils-perl, + libpostscript-perl, + libset-scalar-perl, + libsoap-lite-perl, + libsort-naturally-perl, + libspreadsheet-parseexcel-perl, + libspreadsheet-writeexcel-perl, + libstorable-perl, + libsvg-perl, + libsvg-graph-perl, + liburi-perl, + libxml-dom-xpath-perl, + libxml-parser-perl, + libxml-sax-perl, + libxml-sax-writer-perl, + libxml-simple-perl, + libxml-twig-perl, + libxml-writer-perl, + libxml-libxml-perl, + libwww-perl Suggests: bioperl, - libxml-sax-expatxs-perl + libxml-sax-expatxs-perl # Needed to avoid downloading DTDs. +Breaks: grinder (<< 0.5.3-3~) +Replaces: grinder (<< 0.5.3-3~) Description: BioPerl core perl modules BioPerl is a toolkit of perl modules useful in building bioinformatics solutions in Perl. It is built in an object-oriented manner so that many _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit