This is an automated email from the git hooks/post-receive script. sascha-guest pushed a commit to branch master in repository spades.
commit d0644c3d1286b7de8ca8a10cd366ed546746b41b Author: Sascha Steinbiss <sas...@steinbiss.name> Date: Mon Jun 6 22:34:56 2016 +0000 add man pages --- debian/changelog | 1 + debian/links | 2 ++ debian/man_src/metaspades.1.adoc | 18 ++++++++++++++++++ debian/man_src/plasmidspades.1.adoc | 18 ++++++++++++++++++ debian/man_src/spades.1.adoc | 6 ++++++ 5 files changed, 45 insertions(+) diff --git a/debian/changelog b/debian/changelog index 2074546..f28eb87 100644 --- a/debian/changelog +++ b/debian/changelog @@ -4,6 +4,7 @@ spades (3.8.0+dfsg-1) unstable; urgency=medium * Drop patches that are no longer necessary. * Update licenses. * Add metaspades and plasmidspades symlinks. + * Add man page stubs for metaspades and plasmidspades. -- Sascha Steinbiss <sas...@steinbiss.name> Sun, 05 Jun 2016 09:56:42 +0000 diff --git a/debian/links b/debian/links index 2766c27..78ab128 100644 --- a/debian/links +++ b/debian/links @@ -12,3 +12,5 @@ usr/bin/bwa usr/lib/spades/bin/bwa-spades usr/share/man/man1/spades.1.gz /usr/share/man/man1/spades.py.1.gz usr/share/man/man1/dipspades.1.gz /usr/share/man/man1/dipspades.py.1.gz usr/share/man/man1/truspades.1.gz /usr/share/man/man1/truspades.py.1.gz +usr/share/man/man1/metaspades.1.gz /usr/share/man/man1/metaspades.py.1.gz +usr/share/man/man1/plasmidspades.1.gz /usr/share/man/man1/plasmidspades.py.1.gz diff --git a/debian/man_src/metaspades.1.adoc b/debian/man_src/metaspades.1.adoc new file mode 100644 index 0000000..978645c --- /dev/null +++ b/debian/man_src/metaspades.1.adoc @@ -0,0 +1,18 @@ += metaspades(1) + +## NAME + +metaspades - SPAdes genome assembler (metaSPAdes mode) + +## SYNOPSIS + +*metaspades* [options] -o <output_dir> + +## DESCRIPTION + +*metaspades* runs **SPAdes** in metaSPAdes mode. All parameters are identical to +the regular SPAdes. + +## SEE ALSO + +spades(1) diff --git a/debian/man_src/plasmidspades.1.adoc b/debian/man_src/plasmidspades.1.adoc new file mode 100644 index 0000000..df6cdc2 --- /dev/null +++ b/debian/man_src/plasmidspades.1.adoc @@ -0,0 +1,18 @@ += plasmidspades(1) + +## NAME + +plasmidspades - SPAdes genome assembler (plasmidSPAdes mode) + +## SYNOPSIS + +*plasmidspades* [options] -o <output_dir> + +## DESCRIPTION + +*plasmidspades* runs **SPAdes** in plasmidSPAdes mode. All parameters are identical to +the regular SPAdes. + +## SEE ALSO + +spades(1) diff --git a/debian/man_src/spades.1.adoc b/debian/man_src/spades.1.adoc index 315a8a6..e2f6506 100644 --- a/debian/man_src/spades.1.adoc +++ b/debian/man_src/spades.1.adoc @@ -24,6 +24,12 @@ assembles genomic reads given to it and places the resulting assembly in *--sc*:: this flag is required for MDA (single-cell) data +*--meta*:: + this flag is required for metagenomic sample data + +*--plasmid*:: + Runs plasmidSPAdes pipeline for plasmid detection + *--iontorrent*:: this flag is required for IonTorrent data -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/spades.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit