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commit 3d496c50ae21e25518cd84d8acc013abe2f50ebd Merge: afb1587 5db35e9 Author: Andreas Tille <[email protected]> Date: Sat Sep 10 23:42:10 2016 +0200 Merge tag 'upstream/2.5.0' Upstream version 2.5.0 COPYING | 1547 +- ChangeLog | 437 +- Makefile.am | 3 - Makefile.in | 419 +- README | 106 +- aclocal.m4 | 8687 +------- config/compile | 347 + config/config.h.in | 9 + config/ltmain.sh | 4016 ++-- aclocal.m4 => config/m4/libtool.m4 | 3862 ++-- config/m4/ltoptions.m4 | 384 + config/m4/ltsugar.m4 | 123 + config/m4/ltversion.m4 | 23 + config/m4/lt~obsolete.m4 | 98 + config/test-driver | 139 + configure | 6074 +++--- configure.ac | 338 +- doc/CeCILL.texi | 571 - doc/Makefile.am | 131 - doc/Makefile.in | 767 - doc/crac.info | 806 - doc/crac.texi | 218 - doc/package.texi.in | 2 - man/Makefile.in | 169 +- man/crac.1.in | 192 +- scripts/Makefile.in | 146 +- scripts/crac-client | 2 +- src/Bitset.cpp | 71 + src/Bitset.h | 69 + src/BreakList.cpp | 133 + src/BreakList.h | 117 + src/CandidatBreak.cpp | 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test_f/{causes => splices_adjust}/Makefile.am | 0 test_f/{cigar => splices_adjust}/Makefile.in | 135 +- test_f/splices_adjust/genome.fa | 4 + test_f/splices_adjust/splice.fa | 8 + test_f/splices_adjust/splice.should_get | 10 + 324 files changed, 105036 insertions(+), 64843 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/crac.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
