This is an automated email from the git hooks/post-receive script. malex-guest pushed a commit to branch master in repository bowtie2.
commit ba48105ba643520f6bedd89fceeaf617642d9b4d Merge: c3044e3 b224a1e Author: Alexandre Mestiashvili <[email protected]> Date: Tue Mar 7 10:38:12 2017 +0100 Merge tag 'upstream/2.3.1' Upstream version 2.3.1 MANUAL | 19 ++++ MANUAL.markdown | 40 +++++++ Makefile | 5 +- NEWS | 28 ++++- VERSION | 2 +- bowtie2 | 8 +- bowtie_main.cpp | 241 +++++++++++++++++++++++++++++++++++++++++-- bt2_idx.h | 6 +- bt2_search.cpp | 7 +- doc/manual.html | 24 +++++ doc/website/manual.ssi | 23 ++++- doc/website/old_news.ssi | 40 +++++++ doc/website/recent_news.ssi | 54 ++-------- doc/website/rhsidebar.ssi | 13 +-- formats.h | 1 + opts.h | 3 +- pat.cpp | 145 +++++++++++++++++--------- pat.h | 182 +++++++++++++++++++------------- pthreadGC2.dll | Bin 60273 -> 0 bytes read_qseq.cpp | 8 +- scoring.h | 4 +- scripts/test/simple_tests.pl | 27 +++-- scripts/test/simple_tests.sh | 3 +- 23 files changed, 676 insertions(+), 207 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bowtie2.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
