This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository seqsero.
commit 1d1eb443c921992fcf480858e8fd0b0d631dc640 Author: Andreas Tille <[email protected]> Date: Tue Apr 4 14:51:14 2017 +0200 Go without isPcr for the moment --- debian/README.Debian | 19 +++++++++++++++++++ debian/changelog | 2 -- debian/control | 1 + 3 files changed, 20 insertions(+), 2 deletions(-) diff --git a/debian/README.Debian b/debian/README.Debian new file mode 100644 index 0000000..a9f8811 --- /dev/null +++ b/debian/README.Debian @@ -0,0 +1,19 @@ +SeqSero for Debian +================== + +Upstream lists + + isPcr (http://hgwdev.cse.ucsc.edu/~kent/exe/linux/) written by Jim Kent + +as dependency but tests have shown that it also works without the +isPcr33 executable that was shipped without source. Due to this +experience we set ispcr as "Suggests". If a user might observe any +constraint please file this as a bug report - most favourably after +asking Jim Kent for the source code of this program. + +It might be that the source somehow can be found at + https://github.com/ENCODE-DCC/kentUtils.git +but it is not really clear how and what license it might have + + -- Andreas Tille <[email protected]> Wed, 15 Feb 2017 09:17:30 +0100 + diff --git a/debian/changelog b/debian/changelog index ca8214b..14dc934 100644 --- a/debian/changelog +++ b/debian/changelog @@ -5,8 +5,6 @@ seqsero (1.0-1) UNRELEASED; urgency=medium - See whether upstream will add release tags https://github.com/denglab/SeqSero/issues/2 otherwise fix get-orig-source - - Find source code of isPcr33. Seems to be connected with - https://github.com/ENCODE-DCC/kentUtils.git -- Andreas Tille <[email protected]> Wed, 15 Feb 2017 09:17:30 +0100 diff --git a/debian/control b/debian/control index c9be3fe..4d840a9 100644 --- a/debian/control +++ b/debian/control @@ -19,6 +19,7 @@ Depends: ${python:Depends}, bwa, samtools, sra-toolkit +Suggests: ispcr Description: Salmonella serotyping from genome sequencing data SeqSero is a pipeline for Salmonella serotype determination from raw sequencing reads or genome assemblies. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/seqsero.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
