This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository biosquid.
commit a4e0ee24fd5239fc93026df985a0ce64ac2a329d Author: Andreas Tille <[email protected]> Date: Wed Apr 5 08:49:37 2017 +0200 Rename binary packages and create libsquid1 and libsquid-dev package --- debian/biosquid-dev.install | 1 + debian/compat | 2 +- debian/control | 30 ++++++++++++++++++---- ...ev.README.Debian => libsquid-dev.README.Debian} | 0 debian/{biosquid.docs => libsquid-dev.docs} | 0 ...biosquid-dev.examples => libsquid-dev.examples} | 0 debian/rules | 19 ++++++++++++-- debian/tests/run-unit-test | 2 +- 8 files changed, 45 insertions(+), 9 deletions(-) diff --git a/debian/biosquid-dev.install b/debian/biosquid-dev.install index 802e993..c79177a 100644 --- a/debian/biosquid-dev.install +++ b/debian/biosquid-dev.install @@ -1,2 +1,3 @@ usr/include/* usr/include usr/lib/ usr +squid*.h usr/include/biosquid diff --git a/debian/compat b/debian/compat index ec63514..f599e28 100644 --- a/debian/compat +++ b/debian/compat @@ -1 +1 @@ -9 +10 diff --git a/debian/control b/debian/control index 344692e..59ae234 100644 --- a/debian/control +++ b/debian/control @@ -4,8 +4,8 @@ Uploaders: Nelson A. de Oliveira <[email protected]>, Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 9.20160403), - autoconf, +Build-Depends: debhelper (>= 10), + d-shlibs, autotools-dev, pvm-dev Standards-Version: 3.9.8 @@ -16,6 +16,7 @@ Homepage: http://eddylab.org/software.html Package: biosquid Architecture: any Depends: ${shlibs:Depends}, + libsquid1 (= ${binary:Version}), ${misc:Depends} Recommends: hmmer Description: utilities for biological sequence analysis @@ -29,13 +30,32 @@ Description: utilities for biological sequence analysis This package contains some tools to demonstrate the features of the SQUID library. -Package: biosquid-dev +Package: libsquid1 Architecture: any -Section: devel +Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Suggests: biosquid -Description: headers and static library for biological sequence analysis +Description: biosquid dynamic library for biological sequence analysis + SQUID is a library of C code functions for sequence analysis. It also + includes a number of small utility programs to convert, show statistics, + manipulate and do other functions on sequence files. + . + The original name of the package is "squid", but since there is already + a squid on the archive (a proxy cache), it was renamed to "biosquid". + . + This package contains the dynamic SQUID library. + +Package: libsquid-dev +Architecture: any +Section: libdevel +Depends: ${shlibs:Depends}, + libsquid1 (= ${binary:Version}), + ${misc:Depends} +Breaks: biosquid-dev +Replaces: biosquid-dev +Provides: biosquid-dev +Description: biosquid headers and static library for biological sequence analysis SQUID is a library of C code functions for sequence analysis. It also includes a number of small utility programs to convert, show statistics, manipulate and do other functions on sequence files. diff --git a/debian/biosquid-dev.README.Debian b/debian/libsquid-dev.README.Debian similarity index 100% rename from debian/biosquid-dev.README.Debian rename to debian/libsquid-dev.README.Debian diff --git a/debian/biosquid.docs b/debian/libsquid-dev.docs similarity index 100% rename from debian/biosquid.docs rename to debian/libsquid-dev.docs diff --git a/debian/biosquid-dev.examples b/debian/libsquid-dev.examples similarity index 100% rename from debian/biosquid-dev.examples rename to debian/libsquid-dev.examples diff --git a/debian/rules b/debian/rules index 84045a3..4a867bf 100755 --- a/debian/rules +++ b/debian/rules @@ -1,12 +1,16 @@ #!/usr/bin/make -f + export DEB_BUILD_MAINT_OPTIONS = hardening=+all # Uncomment this to turn on verbose mode. export DH_VERBOSE=1 +DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}') +LIBNAME := libsquid + %: - dh $@ --with autoreconf + dh $@ --no-parallel override_dh_auto_clean: dh_auto_clean @@ -20,11 +24,22 @@ override_dh_auto_configure: override_dh_install: mv $(CURDIR)/debian/tmp/usr/bin/translate $(CURDIR)/debian/tmp/usr/bin/stranslate dh_install + d-shlibmove --commit \ + --multiarch \ + --devunversioned \ + --exclude-la \ + --override s/libpvm3-3-dev/pvm-dev/ \ + --movedev debian/tmp/usr/include/* usr/include \ + --movedev squid.h usr/include/$(DEBPKGNAME) \ + --movedev squidconf.h usr/include/$(DEBPKGNAME) \ + debian/tmp/usr/lib/*/$(LIBNAME).so + +# --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/$(DEB_HOST_MULTIARCH)/pkgconfig \ override_dh_installexamples: dh_installexamples cd $(CURDIR)/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite; make clean - sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' $(CURDIR)/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Formats/*.pl + sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' $(CURDIR)/debian/$(LIBNAME)-dev/usr/share/doc/$(LIBNAME)-dev/examples/Formats/*.pl override_dh_auto_test: chmod u+x Testsuite/x-base-* Testsuite/bug-1-sfetch* diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test index b5ec3ce..9992126 100644 --- a/debian/tests/run-unit-test +++ b/debian/tests/run-unit-test @@ -15,7 +15,7 @@ if [ "$ADTTMP" = "" ] ; then ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` fi cd $ADTTMP -cp -a /usr/share/doc/${pkg}-dev/examples/* $ADTTMP +cp -a /usr/share/doc/libsquid-dev/examples/* $ADTTMP find . -name "*.gz" -exec gunzip \{\} \; cd Testsuite sed -i 's#-I../#-I/usr/include/biosquid#' Makefile -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/biosquid.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
