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tille pushed a change to branch master
in repository psortb.
from 52fbfec Add biosquid-dev
new 1cee463 Remove copies of biosquid - possibly an old version
drained from an old version of hmmer2
new ff5aa84 New upstream version 3.0.4+dfsg
new 3ad9701 Merge tag 'upstream/3.0.4+dfsg'
new b0700ac Use libsquid
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
algorithm-hmm/src/include/gki.h | 51 ---
algorithm-hmm/src/include/msa.h | 286 --------------
algorithm-hmm/src/include/rk.h | 40 --
algorithm-hmm/src/include/sqfuncs.h | 293 --------------
algorithm-hmm/src/include/squid.h | 473 -----------------------
algorithm-hmm/src/include/squidconf.h | 77 ----
algorithm-hmm/src/include/ssi.h | 193 ---------
algorithm-hmm/src/include/stopwatch.h | 59 ---
debian/changelog | 4 +-
debian/control | 3 +-
debian/copyright | 8 +
debian/patches/biosquid_includes.patch | 15 +
debian/patches/series | 2 +
debian/patches/use_declaration_of_biosquid.patch | 14 +
debian/watch | 3 +-
15 files changed, 46 insertions(+), 1475 deletions(-)
delete mode 100644 algorithm-hmm/src/include/gki.h
delete mode 100644 algorithm-hmm/src/include/msa.h
delete mode 100644 algorithm-hmm/src/include/rk.h
delete mode 100644 algorithm-hmm/src/include/sqfuncs.h
delete mode 100644 algorithm-hmm/src/include/squid.h
delete mode 100644 algorithm-hmm/src/include/squidconf.h
delete mode 100644 algorithm-hmm/src/include/ssi.h
delete mode 100644 algorithm-hmm/src/include/stopwatch.h
create mode 100644 debian/patches/biosquid_includes.patch
create mode 100644 debian/patches/series
create mode 100644 debian/patches/use_declaration_of_biosquid.patch
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