This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository psortb.
commit d581a1ce04dd2d4d19cf037ba0f7252ba4e368a5 Author: Andreas Tille <[email protected]> Date: Mon Apr 24 16:51:39 2017 +0200 Add manpage --- debian/createmanpages | 22 ++++++++++++++++++ debian/manpages | 1 + debian/psort.1 | 63 +++++++++++++++++++++++++++++++++++++++++++++++++++ 3 files changed, 86 insertions(+) diff --git a/debian/createmanpages b/debian/createmanpages new file mode 100755 index 0000000..62466f8 --- /dev/null +++ b/debian/createmanpages @@ -0,0 +1,22 @@ +#!/bin/sh +MANDIR=debian +mkdir -p $MANDIR + +VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'` + +AUTHOR=".SH AUTHOR\nThis manpage was written by $DEBFULLNAME for the Debian distribution and +can be used for any other usage of the program. +" + +progname=psort +help2man --no-info --no-discard-stderr --help-option=" " \ + --name='bacterial localization prediction tool' \ + --version-string="$VERSION" ${progname} > $MANDIR/${progname}.1 +echo $AUTHOR >> $MANDIR/${progname}.1 + +cat <<EOT +Please enhance the help2man output. +The following web page might be helpful in doing so: + http://liw.fi/manpages/ +EOT + diff --git a/debian/manpages b/debian/manpages new file mode 100644 index 0000000..0f65186 --- /dev/null +++ b/debian/manpages @@ -0,0 +1 @@ +debian/*.1 diff --git a/debian/psort.1 b/debian/psort.1 new file mode 100644 index 0000000..67e4514 --- /dev/null +++ b/debian/psort.1 @@ -0,0 +1,63 @@ +.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.4. +.TH PSORT "1" "April 2017" "psort 3.0.4" "User Commands" +.SH NAME +psort \- bacterial localization prediction tool +.SH SYNOPSIS +.B psort +[\fI\,-p|-n\/\fR] [\fI\,OPTIONS\/\fR] [\fI\,SEQFILE\/\fR] +.SH DESCRIPTION +Runs psort on the sequence file SEQFILE . If SEQFILE isn't provided +then sequences will be read from STDIN. +.TP +\fB\-\-help\fR, \fB\-h\fR +Displays usage information +.TP +\fB\-\-positive\fR, \fB\-p\fR +Gram positive bacteria +.TP +\fB\-\-negative\fR, \fB\-n\fR +Gram negative bacteria +.TP +\fB\-\-archaea\fR, \fB\-a\fR +Archaea +.TP +\fB\-\-cutoff\fR, \fB\-c\fR +Sets a cutoff value for reported results +.TP +\fB\-\-divergent\fR, \fB\-d\fR +Sets a cutoff value for the multiple +localization flag +.TP +\fB\-\-matrix\fR, \fB\-m\fR +Specifies the path to the pftools instalation. If +not set, defaults to the value of the PSORT_PFTOOLS +environment variable. +.TP +\fB\-\-format\fR, \fB\-f\fR +Specifies sequence format (default is FASTA) +.TP +\fB\-\-exact\fR, \fB\-e\fR +Skip SCLBLASTe (useful for batch runs of data +against itself in SCLBLAST) +.TP +\fB\-\-output\fR, \fB\-o\fR +Specifies the format for the output (default is +\&'normal' Value can be one of: terse, long or normal +.TP +\fB\-\-root\fR, \fB\-r\fR +Specify PSORT_ROOT for running local copies. If +not set, defaults to the value of the PSORT_ROOT +environment variable. +.TP +\fB\-\-server\fR, \fB\-s\fR +Specifies the PSort server to use +.TP +\fB\-\-verbose\fR, \fB\-v\fR +Be verbose while running +.HP +\fB\-\-x\-skip\-localization\fR +.TP +\fB\-\-version\fR +Print the version of PSortb +.SH AUTHOR +This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/psortb.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
