This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository vsearch.
commit a62b050dcb1984a18001a43e1dc705bddc0f4d8b Merge: 6aa93f1 38304cc Author: Andreas Tille <ti...@debian.org> Date: Mon Jun 19 11:55:24 2017 +0200 Merge tag 'upstream/2.4.3' Upstream version 2.4.3 .gitignore | 2 + LICENSE.txt | 2 +- README.md | 62 ++-- configure.ac | 12 +- man/vsearch.1 | 64 ++-- src/Makefile.am | 36 +- src/abundance.cc | 20 +- src/abundance.h | 6 +- src/align.cc | 100 +++--- src/align.h | 42 +-- src/align_simd.cc | 963 ++++++++++++++++++++++++++++++++++++++------------- src/align_simd.h | 2 +- src/allpairs.cc | 91 ++--- src/allpairs.h | 2 +- src/arch.cc | 158 ++++++++- src/arch.h | 13 +- src/bitmap.cc | 6 +- src/bitmap.h | 2 +- src/chimera.cc | 110 +++--- src/chimera.h | 2 +- src/cluster.cc | 96 ++--- src/cluster.h | 2 +- src/cpu.cc | 49 ++- src/cpu.h | 8 +- src/db.cc | 60 ++-- src/db.h | 24 +- src/dbhash.cc | 42 +-- src/dbhash.h | 24 +- src/dbindex.cc | 24 +- src/dbindex.h | 6 +- src/derep.cc | 136 ++++---- src/derep.h | 2 +- src/dynlibs.cc | 73 +++- src/dynlibs.h | 10 +- src/eestats.cc | 82 ++--- src/eestats.h | 2 +- src/fasta.cc | 54 +-- src/fasta.h | 34 +- src/fastq.cc | 66 ++-- src/fastq.h | 20 +- src/fastqops.cc | 216 ++++++------ src/fastqops.h | 2 +- src/fastx.cc | 40 ++- src/fastx.h | 43 +-- src/linmemalign.cc | 156 ++++----- src/linmemalign.h | 100 +++--- src/maps.cc | 2 +- src/maps.h | 2 +- src/mask.cc | 10 +- src/mask.h | 2 +- src/mergepairs.cc | 177 +++++----- src/mergepairs.h | 2 +- src/minheap.cc | 8 +- src/minheap.h | 3 +- src/msa.cc | 26 +- src/msa.h | 4 +- src/otutable.cc | 48 ++- src/otutable.h | 4 +- src/rerep.cc | 14 +- src/rerep.h | 2 +- src/results.cc | 83 ++--- src/results.h | 14 +- src/search.cc | 71 ++-- src/search.h | 2 +- src/searchcore.cc | 42 ++- src/searchcore.h | 2 +- src/searchexact.cc | 79 +++-- src/searchexact.h | 2 +- src/showalign.cc | 64 ++-- src/showalign.h | 12 +- src/shuffle.cc | 6 +- src/shuffle.h | 2 +- src/sortbylength.cc | 4 +- src/sortbylength.h | 2 +- src/sortbysize.cc | 6 +- src/sortbysize.h | 2 +- src/subsample.cc | 26 +- src/subsample.h | 2 +- src/unique.cc | 40 +-- src/unique.h | 2 +- src/userfields.cc | 6 +- src/userfields.h | 2 +- src/util.cc | 134 +++---- src/util.h | 20 +- src/vsearch.cc | 203 ++++++----- src/vsearch.h | 218 +++++++----- src/xstring.h | 2 +- test/unclassified.sh | 70 ++++ 88 files changed, 2688 insertions(+), 1800 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/vsearch.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit