Author: moeller Date: 2017-08-29 19:08:55 +0000 (Tue, 29 Aug 2017) New Revision: 23974
Modified: trunk/packages/bowtie/trunk/debian/upstream/edam Log: Correcting semantics, syntax is yamllint clean. Modified: trunk/packages/bowtie/trunk/debian/upstream/edam =================================================================== --- trunk/packages/bowtie/trunk/debian/upstream/edam 2017-08-28 18:46:21 UTC (rev 23973) +++ trunk/packages/bowtie/trunk/debian/upstream/edam 2017-08-29 19:08:55 UTC (rev 23974) @@ -1,64 +1,57 @@ --- ontology: EDAM (1.13) topic: - - Genomics + - Genomics scopes: - - name: summary - function: - - operation_3211 Genome indexing - - operation_0292 Sequence alignment generation - inputs: - - data_2975 Nucleic acid sequence (raw) - - format_1929 FASTA - - format_1930 FASTQ - outputs: - - data_1383 Sequence alignment (nucleic acid) - - format_2573 SAM - - name: bowtie-build - function: operation_3212 Genome indexing (Burrows-Wheeler) - inputs: - - data_2975 Nucleic acid sequence (raw) - - format_1929 FASTA - outputs: - - data_3210 Genome index - - ??? Bowtie index format EBWT - - ??? Bowtie long index format EBTWL - - name: bowtie-inspect - function: - - operation_1813 Sequence retrieval - - operation_0304 Metadata retrieval - - operation_0228 Data index analysis - inputs: - - data_3210 Genome index - - ??? Bowtie index format EBWT - - ??? Bowtie long index format EBTWL - outputs: - - data_2975 Nucleic acid sequence (raw) - - format_1929 FASTA - - format_1964 plain text format (unformatted) - - name: bowtie - function: - - operation_0350 Sequence database search (by sequence using word-based methods) - - operation_0292 Sequence alignment generation - inputs: - - data_3210 Genome index - - data_2975 Nucleic acid sequence (raw) - - format_1964 plain text format (unformatted) - - format_1929 FASTA - - format_1930 FASTQ - outputs: - - data_1383 Sequence alignment (nucleic acid) - - data_0867 Sequence alignment report - - format_2573 SAM - - ??? Bowtie alignment report format - - name: FIXME remainings of blody syntax errors - function: - - operation_3212 Genome indexing (Burrows-Wheeler) - - operation_0292 Sequence alignment generation - inputs: - - data_2975 Nucleic acid sequence (raw) - - format_1929 FASTA - - format_1930 FASTQ - outputs: - - data_1383 Sequence alignment (nucleic acid) - - format_2573 SAM + - name: summary + function: + - Genome indexing + - Sequence alignment generation + input: + - data: Nucleic acid sequence (raw) + format: [FASTA, FASTQ] + output: + - data: Sequence alignment (nucleic acid) + format: [SAM] + - name: bowtie-build + function: Genome indexing (Burrows-Wheeler) + input: + - data: Nucleic acid sequence (raw) + format: [FASTA] + outputs: + - data: Genome index + format: + - Bowtie index format EBWT + - Bowtie long index format EBTWL + - name: bowtie-inspect + function: + - Sequence retrieval + - Metadata retrieval + - Data index analysis + inputs: + - data: Genome index + format: + - Bowtie index format EBWT + - Bowtie long index format EBTWL + outputs: + - data: Nucleic acid sequence (raw) + format: + - FASTA + - plain text format (unformatted) + - name: bowtie + function: + - Sequence database search (by sequence using word-based methods) + - Sequence alignment generation + inputs: + - data: Genome index + - data: Nucleic acid sequence (raw) + format: + - plain text format (unformatted) + - FASTA + - FASTQ + outputs: + - data: Sequence alignment (nucleic acid) + - data: Sequence alignment report + format: + - SAM + - Bowtie alignment report format _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
