This is an automated email from the git hooks/post-receive script. moeller pushed a change to branch upstream in repository fast5.
from d798d48 Imported Upstream version 0.5.9 adds 1a33a45 New upstream version 0.6.2 No new revisions were added by this update. Summary of changes: .travis.Dockerfile.in | 17 +- .travis.yml | 2 +- .version_files | 2 +- README.org | 91 +- VERSION | 2 +- python/.gitignore | 1 + python/Makefile | 20 +- python/bin/f5ls | 249 ++++ python/bin/f5pack | 240 ++++ python/fast5/.version.py.in | 1 - python/fast5/__init__.py | 10 - python/fast5/fast5.pyx | 523 +++++++ python/fast5/source/fast5.cpp | 182 --- python/fast5/version.py | 1 - python/setup.py | 86 +- src/.fast5_version.hpp.in | 16 + src/.gitignore | 1 + src/Bit_Packer.hpp | 152 ++ src/File_Packer.hpp | 982 +++++++++++++ src/Huffman_Packer.hpp | 357 +++++ src/Makefile | 42 +- src/cwmap.fast5_ed_len_1.inl | 103 ++ src/cwmap.fast5_ed_skip_1.inl | 4 + src/cwmap.fast5_ev_move_1.inl | 6 + src/cwmap.fast5_ev_rel_skip_1.inl | 4 + src/cwmap.fast5_fq_bp_1.inl | 7 + src/cwmap.fast5_fq_qv_1.inl | 35 + src/cwmap.fast5_rw_1.inl | 204 +++ src/f5-mod.cpp | 14 +- src/f5dump.cpp | 96 +- src/f5ls-full.cpp | 35 +- src/f5ls.cpp | 17 +- src/f5pack.cpp | 185 +++ src/fast5.hpp | 2788 ++++++++++++++++++++++++++++--------- src/fast5_version.hpp | 16 + src/hdf5-mod.cpp | 12 + src/hdf5_tools.hpp | 316 ++++- src/huffman-decode.cpp | 55 + src/huffman-encode.cpp | 44 + src/hufftk | 171 +++ src/logger.hpp | 378 +++++ src/tmp.cpp | 7 + 42 files changed, 6340 insertions(+), 1134 deletions(-) create mode 100755 python/bin/f5ls create mode 100755 python/bin/f5pack delete mode 100644 python/fast5/.version.py.in delete mode 100755 python/fast5/__init__.py create mode 100644 python/fast5/fast5.pyx delete mode 100644 python/fast5/source/fast5.cpp delete mode 100644 python/fast5/version.py mode change 100644 => 100755 python/setup.py create mode 100644 src/.fast5_version.hpp.in create mode 100644 src/Bit_Packer.hpp create mode 100644 src/File_Packer.hpp create mode 100644 src/Huffman_Packer.hpp create mode 100644 src/cwmap.fast5_ed_len_1.inl create mode 100644 src/cwmap.fast5_ed_skip_1.inl create mode 100644 src/cwmap.fast5_ev_move_1.inl create mode 100644 src/cwmap.fast5_ev_rel_skip_1.inl create mode 100644 src/cwmap.fast5_fq_bp_1.inl create mode 100644 src/cwmap.fast5_fq_qv_1.inl create mode 100644 src/cwmap.fast5_rw_1.inl create mode 100644 src/f5pack.cpp create mode 100644 src/fast5_version.hpp create mode 100644 src/huffman-decode.cpp create mode 100644 src/huffman-encode.cpp create mode 100755 src/hufftk create mode 100644 src/logger.hpp -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/fast5.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit