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commit 41ef25b263efa5c73c05ac977ef7893da8ed5c69
Author: Andreas Tille <ti...@debian.org>
Date: Tue Jan 10 08:39:25 2017 +0000
Fix versioned depends from r-cran-ade4
---
debian/changelog | 7 +++++++
debian/patches/fix_r-cran-ade4_versioning.patch | 21 +++++++++++++++++++++
debian/patches/series | 1 +
3 files changed, 29 insertions(+)
diff --git a/debian/changelog b/debian/changelog
index b8d5743..3798922 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+r-bioc-phyloseq (1.19.1-2) unstable; urgency=medium
+
+ * Fix versioned depends from r-cran-ade4
+ Closes: #850767
+
+ -- Andreas Tille <ti...@debian.org> Tue, 10 Jan 2017 09:31:39 +0100
+
r-bioc-phyloseq (1.19.1-1) unstable; urgency=medium
* New upstream version
diff --git a/debian/patches/fix_r-cran-ade4_versioning.patch
b/debian/patches/fix_r-cran-ade4_versioning.patch
new file mode 100644
index 0000000..7149493
--- /dev/null
+++ b/debian/patches/fix_r-cran-ade4_versioning.patch
@@ -0,0 +1,21 @@
+Author: Andreas Tille <ti...@debian.org>
+Last-Update: Tue, 10 Jan 2017 08:53:44 +0100
+Description: Phyloseq upstream does not distinguish between '.' and '-' in
+ version specification. Due to automatic calculation of dependencies via
+ ${R:Depends} the wrongly versioned relation to r-cran-ade4 ends up in the
+ control information of the package. This patch fixes the relation.
+ .
+ See
+
https://lists.alioth.debian.org/pipermail/debian-med-packaging/2016-November/047737.html
+
+--- a/DESCRIPTION
++++ b/DESCRIPTION
+@@ -10,7 +10,7 @@ Author: Paul J. McMurdie <joey711@gmail.
+ Susan Holmes <su...@stat.stanford.edu>, with
+ contributions from Gregory Jordan and Scott Chamberlain
+ License: AGPL-3
+-Imports: BiocGenerics (>= 0.18.0), ade4 (>= 1.7.4), ape (>= 3.4),
++Imports: BiocGenerics (>= 0.18.0), ade4 (>= 1.7-4), ape (>= 3.4),
+ biomformat (>= 1.0.0), Biostrings (>= 2.40.0), cluster (>=
+ 2.0.4), data.table (>= 1.9.6), foreach (>= 1.4.3), ggplot2 (>=
+ 2.1.0), igraph (>= 1.0.1), methods (>= 3.3.0), multtest (>=
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..3ab221a
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+fix_r-cran-ade4_versioning.patch
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