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commit 8a77d0661589d179bf24fd48322dffa4e5f12533 Author: Andreas Tille <[email protected]> Date: Sun Jan 19 13:49:19 2014 +0000 Inject packaging for last database needed to test annotationdbi --- debian/README.test | 5 ++ debian/changelog | 5 ++ debian/compat | 1 + debian/control | 22 +++++++++ debian/copyright | 134 +++++++++++++++++++++++++++++++++++++++++++++++++++ debian/rules | 4 ++ debian/source/format | 1 + debian/watch | 3 ++ 8 files changed, 175 insertions(+) diff --git a/debian/README.test b/debian/README.test new file mode 100644 index 0000000..149dd05 --- /dev/null +++ b/debian/README.test @@ -0,0 +1,5 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by loading it into R with the command +‘library(GO.db)’ in order to confirm its integrity. diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..0f1b7d9 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +r-bioc-go.db (2.10.1-1) UNRELEASED; urgency=low + + * Initial release (closes: #???) + + -- Andreas Tille <[email protected]> Thu, 16 Jan 2014 14:13:14 +0100 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..ecfa25f --- /dev/null +++ b/debian/control @@ -0,0 +1,22 @@ +Source: r-bioc-go.db +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Section: gnu-r +Priority: optional +Build-Depends: debhelper (>= 9), + cdbs, + r-base-dev, + r-bioc-annotationdbi +Standards-Version: 3.9.5 +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-go.db/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-go.db/trunk/ +Homepage: http://bioconductor.org/packages/release/data/annotation/html/GO.db.html + +Package: r-bioc-go.db +Architecture: all +Depends: ${R:Depends}, + ${misc:Depends}, + r-bioc-annotationdbi +Description: annotation maps describing the entire Gene Ontology + This package is part of BioConductor and provides a set of annotation + maps describing the entire Gene Ontology assembled using data from GO. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..3c5783f --- /dev/null +++ b/debian/copyright @@ -0,0 +1,134 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: GO.db +Upstream-Contact: Bioconductor Package Maintainer <[email protected]> +Source: http://bioconductor.org/packages/release/data/annotation/html/GO.db.html + +Files: * +Copyright: © 2006-2013 Marc Carlson +License: Artistic-2.0 + +Files: debian/* +Copyright: 2014 Andreas Tille <[email protected]> +License: Artistic-2.0 + +License: Artistic-2.0 + Permission for Use and Modification Without Distribution + . + (1) You are permitted to use the Standard Version and create and use + Modified Versions for any purpose without restriction, provided that you + do not Distribute the Modified Version. Permissions for Redistribution + of the Standard Version + . + (2) You may Distribute verbatim copies of the Source form of the + Standard Version of this Package in any medium without restriction, + either gratis or for a Distributor Fee, provided that you duplicate all + of the original copyright notices and associated disclaimers. At your + discretion, such verbatim copies may or may not include a Compiled form + of the Package. + . + (3) You may apply any bug fixes, portability changes, and other + modifications made available from the Copyright Holder. The resulting + Package will still be considered the Standard Version, and as such will + be subject to the Original License. Distribution of Modified Versions + of the Package as Source + . + (4) You may Distribute your Modified Version as Source (either gratis + or for a Distributor Fee, and with or without a Compiled form of the + Modified Version) provided that you clearly document how it differs from + the Standard Version, including, but not limited to, documenting any + non-standard features, executables, or modules, and provided that you do + at least ONE of the following: + . + (a) make the Modified Version available to the Copyright Holder of + the Standard Version, under the Original License, so that the + Copyright Holder may include your modifications in the Standard + Version. + (b) ensure that installation of your Modified Version does not + prevent the user installing or running the Standard Version. In + addition, the Modified Version must bear a name that is different + from the name of the Standard Version. + (c) allow anyone who receives a copy of the Modified Version to + make the Source form of the Modified Version available to others + under + (i) the Original License or + (ii) a license that permits the licensee to freely copy, modify + and redistribute the Modified Version using the same licensing + terms that apply to the copy that the licensee received, and + requires that the Source form of the Modified Version, and of + any works derived from it, be made freely available in that + license fees are prohibited but Distributor Fees are allowed. + . + Distribution of Compiled Forms of the Standard Version or Modified Versions without the Source + . + (5) You may Distribute Compiled forms of the Standard Version without + the Source, provided that you include complete instructions on how to + get the Source of the Standard Version. Such instructions must be valid + at the time of your distribution. If these instructions, at any time + while you are carrying out such distribution, become invalid, you must + provide new instructions on demand or cease further distribution. If you + provide valid instructions or cease distribution within thirty days + after you become aware that the instructions are invalid, then you do + not forfeit any of your rights under this license. + . + (6) You may Distribute a Modified Version in Compiled form without the + Source, provided that you comply with Section 4 with respect to the + Source of the Modified Version. + . + Aggregating or Linking the Package + . + (7) You may aggregate the Package (either the Standard Version or + Modified Version) with other packages and Distribute the resulting + aggregation provided that you do not charge a licensing fee for the + Package. Distributor Fees are permitted, and licensing fees for other + components in the aggregation are permitted. The terms of this license + apply to the use and Distribution of the Standard or Modified Versions + as included in the aggregation. + . + (8) You are permitted to link Modified and Standard Versions with other + works, to embed the Package in a larger work of your own, or to build + stand-alone binary or bytecode versions of applications that include the + Package, and Distribute the result without restriction, provided the + result does not expose a direct interface to the Package. + . + Items That are Not Considered Part of a Modified Version + . + (9) Works (including, but not limited to, modules and scripts) that + merely extend or make use of the Package, do not, by themselves, cause + the Package to be a Modified Version. In addition, such works are not + considered parts of the Package itself, and are not subject to the terms + of this license. + . + General Provisions + . + (10) Any use, modification, and distribution of the Standard or + Modified Versions is governed by this Artistic License. By using, + modifying or distributing the Package, you accept this license. Do not + use, modify, or distribute the Package, if you do not accept this + license. + . + (11) If your Modified Version has been derived from a Modified Version + made by someone other than you, you are nevertheless required to ensure + that your Modified Version complies with the requirements of this + license. + . + (12) This license does not grant you the right to use any trademark, + service mark, tradename, or logo of the Copyright Holder. + . + (13) This license includes the non-exclusive, worldwide, free-of-charge + patent license to make, have made, use, offer to sell, sell, import and + otherwise transfer the Package with respect to any patent claims + licensable by the Copyright Holder that are necessarily infringed by the + Package. If you institute patent litigation (including a cross-claim or + counterclaim) against any party alleging that the Package constitutes + direct or contributory patent infringement, then this Artistic License + to you shall terminate on the date that such litigation is filed. + . + (14) Disclaimer of Warranty: THE PACKAGE IS PROVIDED BY THE COPYRIGHT + HOLDER AND CONTRIBUTORS "AS IS' AND WITHOUT ANY EXPRESS OR IMPLIED + WARRANTIES. THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A + PARTICULAR PURPOSE, OR NON-INFRINGEMENT ARE DISCLAIMED TO THE EXTENT + PERMITTED BY YOUR LOCAL LAW. UNLESS REQUIRED BY LAW, NO COPYRIGHT HOLDER + OR CONTRIBUTOR WILL BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, OR + CONSEQUENTIAL DAMAGES ARISING IN ANY WAY OUT OF THE USE OF THE PACKAGE, + EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..aeb12b3 --- /dev/null +++ b/debian/rules @@ -0,0 +1,4 @@ +#!/usr/bin/make -f + +debRreposname=bioc +include /usr/share/R/debian/r-cran.mk diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..67f0daa --- /dev/null +++ b/debian/watch @@ -0,0 +1,3 @@ +version=3 +opts=downloadurlmangle=s/\.\./packages\/release\/data\/annotation/ \ + http://www.bioconductor.org/packages/release/data/annotation/html/GO.db.html .*/GO\.db_([\d\.]+)\.tar\.gz -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-go.db.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
