This is an automated email from the git hooks/post-receive script. gregsharp-guest pushed a change to branch upstream in repository plastimatch.
from e1533f5 New upstream version 1.6.5+dfsg.1 adds 9a47d41 New upstream version 1.6.6+dfsg.1 No new revisions were added by this update. Summary of changes: CMakeLists.txt | 20 +- INSTALL.TXT | 0 LICENSE.TXT | 0 README.TXT | 37 +- Testing/CMakeLists.txt | 180 ++-- ...{plm-reg-stiffness-a.txt => plm-bsp-dmap-k.txt} | 13 +- Testing/Data/plm-bsp-sm-multi-a.txt | 12 +- Testing/Data/plm-reg-align-center.txt | 9 +- Testing/Data/plm-reg-gw-a.txt | 8 + Testing/Data/plm-reg-multi-a.txt | 1 - Testing/Data/proton-dose-1.txt | 0 .../{proton-dose-5g.txt => proton-dose-5d.txt} | 36 +- .../{proton-dose-5a.txt => proton-dose-7a.txt} | 36 +- cmake/FindCUDA_wrap.cmake | 9 + cmake/FindKaze.cmake | 35 + cmake/FindPaxscan.cmake | 2 +- doc/NOTES.TXT | 396 +++++++- doc/STYLE_GUIDE_2.TXT | 35 + doc/man/drr.1 | 2 +- doc/man/fdk.1 | 6 +- doc/man/landmark_warp.1 | 2 +- doc/man/plastimatch.1 | 32 +- run_lcov.sh | 7 - src/CMakeLists.txt | 5 + src/plastimatch/CHANGELOG.TXT | 10 + src/plastimatch/CMakeLists.txt | 5 +- src/plastimatch/COPYRIGHT.TXT | 0 src/plastimatch/Doxyfile.in | 0 src/plastimatch/base/CMakeLists.txt | 3 + src/plastimatch/base/aperture.cxx | 82 +- src/plastimatch/base/aperture.h | 11 +- src/plastimatch/base/bspline_xform.cxx | 33 +- src/plastimatch/base/bspline_xform.h | 10 + src/plastimatch/base/dcmtk_config.h | 0 src/plastimatch/base/dcmtk_file.cxx | 8 +- src/plastimatch/base/dcmtk_file.h | 0 src/plastimatch/base/dcmtk_image.cxx | 11 +- src/plastimatch/base/dcmtk_metadata.cxx | 0 src/plastimatch/base/dcmtk_metadata.h | 0 src/plastimatch/base/dcmtk_module.cxx | 13 +- src/plastimatch/base/dcmtk_rdd.cxx | 0 src/plastimatch/base/dcmtk_rdd.h | 0 src/plastimatch/base/dcmtk_rt_study.cxx | 0 src/plastimatch/base/dcmtk_rt_study.h | 1 + src/plastimatch/base/dcmtk_rtdose.cxx | 5 +- src/plastimatch/base/dcmtk_rtplan.cxx | 152 ++- src/plastimatch/base/dcmtk_rtss.cxx | 7 +- src/plastimatch/base/dcmtk_rtss.h | 0 src/plastimatch/base/dcmtk_series.cxx | 0 src/plastimatch/base/dcmtk_series.h | 2 +- src/plastimatch/base/dcmtk_slice_data.h | 0 src/plastimatch/base/dcmtk_uid.cxx | 0 src/plastimatch/base/dcmtk_uid.h | 0 src/plastimatch/base/dcmtk_util.cxx | 6 + src/plastimatch/base/dcmtk_util.h | 2 + src/plastimatch/base/dicom.dic | 0 src/plastimatch/base/dicom_util.cxx | 0 src/plastimatch/base/dicom_util.h | 0 src/plastimatch/base/direction_cosines.cxx | 0 src/plastimatch/base/direction_cosines.h | 0 src/plastimatch/base/direction_matrices.cxx | 0 src/plastimatch/base/direction_matrices.h | 0 src/plastimatch/base/float_pair_list.cxx | 0 src/plastimatch/base/float_pair_list.h | 0 src/plastimatch/base/gaussian.cxx | 1 - src/plastimatch/base/gaussian.h | 0 src/plastimatch/base/gdcm1_dose.cxx | 0 src/plastimatch/base/gdcm1_dose.h | 0 src/plastimatch/base/gdcm1_file.cxx | 0 src/plastimatch/base/gdcm1_file.h | 0 src/plastimatch/base/gdcm1_rdd.cxx | 0 src/plastimatch/base/gdcm1_rdd.h | 0 src/plastimatch/base/gdcm1_rtss.cxx | 0 src/plastimatch/base/gdcm1_rtss.h | 0 src/plastimatch/base/gdcm1_series.cxx | 0 src/plastimatch/base/gdcm1_series.h | 0 src/plastimatch/base/gdcm1_series_helper_2.cxx | 0 src/plastimatch/base/gdcm1_series_helper_2.h | 0 src/plastimatch/base/gdcm1_util.cxx | 0 src/plastimatch/base/gdcm1_util.h | 0 src/plastimatch/base/gdcm2_util.cxx | 0 src/plastimatch/base/gdcm2_util.h | 0 src/plastimatch/base/hnd_io.cxx | 2 +- src/plastimatch/base/interpolate.cxx | 76 +- src/plastimatch/base/interpolate.h | 23 +- src/plastimatch/base/itkClampCastImageFilter.h | 0 src/plastimatch/base/itkClampCastImageFilter.txx | 0 src/plastimatch/base/itk_bbox.cxx | 50 + .../base/{dcmtk_rtdose.h => itk_bbox.h} | 9 +- src/plastimatch/base/itk_dicom_load.cxx | 0 src/plastimatch/base/itk_dicom_load.h | 0 src/plastimatch/base/itk_dicom_save.cxx | 0 src/plastimatch/base/itk_dicom_save.h | 0 src/plastimatch/base/itk_directions.cxx | 0 src/plastimatch/base/itk_directions.h | 0 src/plastimatch/base/itk_image_clone.cxx | 22 +- src/plastimatch/base/itk_image_clone.h | 2 + src/plastimatch/base/itk_image_load_char.cxx | 0 src/plastimatch/base/itk_image_load_double.cxx | 0 src/plastimatch/base/itk_image_type.h | 0 src/plastimatch/base/itk_metadata.cxx | 0 src/plastimatch/base/itk_metadata.h | 0 src/plastimatch/base/itk_pointset.cxx | 0 src/plastimatch/base/itk_pointset.h | 0 src/plastimatch/base/parameter_parser.cxx | 42 +- src/plastimatch/base/parameter_parser.h | 12 + src/plastimatch/base/plm_file_format.cxx | 0 src/plastimatch/base/plm_file_format.h | 0 src/plastimatch/base/plm_image_header.cxx | 13 + src/plastimatch/base/plm_image_header.h | 2 + src/plastimatch/base/plm_image_type.cxx | 0 src/plastimatch/base/proj_image.cxx | 6 +- src/plastimatch/base/proj_matrix.cxx | 21 +- src/plastimatch/base/proj_matrix.h | 14 +- src/plastimatch/base/proj_volume.cxx | 51 +- src/plastimatch/base/proj_volume.h | 23 +- src/plastimatch/base/pwlut.cxx | 0 src/plastimatch/base/pwlut.h | 0 src/plastimatch/base/ray_trace.h | 7 +- src/plastimatch/base/ray_trace_uniform.cxx | 6 - src/plastimatch/base/rpl_volume.cxx | 1051 ++++++-------------- src/plastimatch/base/rpl_volume.h | 58 +- src/plastimatch/base/rpl_volume_lut.cxx | 163 +++ src/plastimatch/base/rpl_volume_lut.h | 37 + src/plastimatch/base/rt_study_metadata.cxx | 109 +- src/plastimatch/base/rt_study_metadata.h | 24 +- src/plastimatch/base/rt_study_p.h | 0 src/plastimatch/base/rtplan.cxx | 11 + src/plastimatch/base/rtplan.h | 16 + src/plastimatch/base/rtplan_beam.cxx | 43 +- src/plastimatch/base/rtplan_beam.h | 30 +- src/plastimatch/base/rtplan_control_pt.h | 0 src/plastimatch/base/rtss.cxx | 16 +- src/plastimatch/base/slice_list.cxx | 0 src/plastimatch/base/slice_list.h | 0 src/plastimatch/base/thumbnail.cxx | 0 src/plastimatch/base/thumbnail.h | 0 src/plastimatch/base/vf.cxx | 0 src/plastimatch/base/vf_convolve.cxx | 0 src/plastimatch/base/volume.cxx | 2 +- src/plastimatch/base/volume.h | 24 +- src/plastimatch/base/volume_boundary_behavior.h | 24 + src/plastimatch/base/volume_fill.cxx | 0 src/plastimatch/base/volume_fill.h | 0 src/plastimatch/base/volume_grad.cxx | 8 +- src/plastimatch/base/volume_grad.h | 4 +- src/plastimatch/base/volume_header.cxx | 11 + src/plastimatch/base/volume_header.h | 2 + src/plastimatch/base/volume_limit.h | 0 src/plastimatch/base/volume_macros.h | 0 src/plastimatch/base/volume_resample.cxx | 0 src/plastimatch/base/volume_stats.cxx | 0 src/plastimatch/base/volume_stats.h | 0 src/plastimatch/base/xform_convert.cxx | 0 src/plastimatch/base/xform_convert.h | 0 src/plastimatch/base/xform_legacy.cxx | 0 src/plastimatch/base/xform_legacy.h | 0 src/plastimatch/base/xio_ct.cxx | 0 src/plastimatch/base/xio_ct_transform.cxx | 0 src/plastimatch/base/xio_ct_transform.h | 0 src/plastimatch/base/xio_demographic.cxx | 0 src/plastimatch/base/xio_demographic.h | 0 src/plastimatch/base/xio_dir.cxx | 0 src/plastimatch/base/xio_patient.cxx | 0 src/plastimatch/base/xio_patient.h | 0 src/plastimatch/base/xio_structures.cxx | 0 src/plastimatch/cli/CMakeLists.txt | 5 +- src/plastimatch/cli/pcmd_add.h | 0 src/plastimatch/cli/pcmd_adjust.cxx | 0 src/plastimatch/cli/pcmd_adjust.h | 0 src/plastimatch/cli/pcmd_autolabel.cxx | 0 src/plastimatch/cli/pcmd_autolabel.h | 0 src/plastimatch/cli/pcmd_autolabel_train.cxx | 0 src/plastimatch/cli/pcmd_autolabel_train.h | 0 src/plastimatch/cli/pcmd_bbox.cxx | 130 +++ src/plastimatch/cli/{pcmd_drr.h => pcmd_bbox.h} | 6 +- src/plastimatch/cli/pcmd_benchmark.cxx | 0 src/plastimatch/cli/pcmd_benchmark.h | 0 src/plastimatch/cli/pcmd_boundary.cxx | 0 src/plastimatch/cli/pcmd_boundary.h | 0 src/plastimatch/cli/pcmd_compare.cxx | 0 src/plastimatch/cli/pcmd_compare.h | 0 src/plastimatch/cli/pcmd_compose.cxx | 0 src/plastimatch/cli/pcmd_compose.h | 0 src/plastimatch/cli/pcmd_crop.cxx | 0 src/plastimatch/cli/pcmd_crop.h | 0 src/plastimatch/cli/pcmd_dice.cxx | 0 src/plastimatch/cli/pcmd_dice.h | 0 src/plastimatch/cli/pcmd_diff.cxx | 0 src/plastimatch/cli/pcmd_diff.h | 0 src/plastimatch/cli/pcmd_dmap.cxx | 0 src/plastimatch/cli/pcmd_dmap.h | 0 src/plastimatch/cli/pcmd_dose.cxx | 33 + src/plastimatch/cli/{pcmd_add.h => pcmd_dose.h} | 6 +- src/plastimatch/cli/pcmd_drr.cxx | 0 src/plastimatch/cli/pcmd_drr.h | 0 src/plastimatch/cli/pcmd_dvh.cxx | 0 src/plastimatch/cli/pcmd_dvh.h | 0 src/plastimatch/cli/pcmd_filter.cxx | 0 src/plastimatch/cli/pcmd_filter.h | 0 src/plastimatch/cli/pcmd_gamma.cxx | 0 src/plastimatch/cli/pcmd_gamma.h | 0 src/plastimatch/cli/pcmd_header.cxx | 0 src/plastimatch/cli/pcmd_header.h | 0 src/plastimatch/cli/pcmd_mabs.cxx | 0 src/plastimatch/cli/pcmd_mabs.h | 0 src/plastimatch/cli/pcmd_mask.cxx | 0 src/plastimatch/cli/pcmd_mask.h | 0 src/plastimatch/cli/pcmd_probe.h | 0 src/plastimatch/cli/pcmd_register.cxx | 9 +- src/plastimatch/cli/pcmd_scale.h | 0 src/plastimatch/cli/pcmd_segment.cxx | 0 src/plastimatch/cli/pcmd_segment.h | 0 src/plastimatch/cli/pcmd_sift.h | 0 src/plastimatch/cli/pcmd_stats.cxx | 0 src/plastimatch/cli/pcmd_stats.h | 0 src/plastimatch/cli/pcmd_synth.cxx | 0 src/plastimatch/cli/pcmd_synth.h | 0 src/plastimatch/cli/pcmd_synth_vf.cxx | 0 src/plastimatch/cli/pcmd_synth_vf.h | 0 src/plastimatch/cli/pcmd_threshold.cxx | 0 src/plastimatch/cli/pcmd_threshold.h | 0 src/plastimatch/cli/pcmd_thumbnail.cxx | 0 src/plastimatch/cli/pcmd_thumbnail.h | 0 src/plastimatch/cli/pcmd_union.h | 0 .../vf_invert_main.cxx => cli/pcmd_vf_invert.cxx} | 51 +- .../cli/{pcmd_benchmark.h => pcmd_vf_invert.h} | 6 +- src/plastimatch/cli/pcmd_warp.cxx | 0 src/plastimatch/cli/pcmd_warp.h | 0 src/plastimatch/cli/pcmd_warp_pointset.cxx | 0 src/plastimatch/cli/pcmd_xf_convert.cxx | 0 src/plastimatch/cli/pcmd_xf_convert.h | 0 src/plastimatch/cli/pcmd_xio_dvh.cxx | 0 src/plastimatch/cli/pcmd_xio_dvh.h | 0 src/plastimatch/cli/plastimatch_main.cxx | 30 +- src/plastimatch/clp/CMakeLists.txt | 0 src/plastimatch/clp/plm_clp.cxx | 0 src/plastimatch/clp/plm_clp.h | 0 src/plastimatch/cuda/cuda_probe.h | 0 src/plastimatch/dose/CMakeLists.txt | 27 +- src/plastimatch/dose/dose_volume_functions.cxx | 115 ++- src/plastimatch/dose/dose_volume_functions.h | 4 +- src/plastimatch/dose/rt_beam.cxx | 1006 +++++++++++++++---- src/plastimatch/dose/rt_beam.h | 114 ++- .../dose/{bragg_curve.h => rt_beam_model.cxx} | 26 +- src/plastimatch/dose/rt_beam_model.h | 21 + src/plastimatch/dose/rt_depth_dose.cxx | 180 ++-- src/plastimatch/dose/rt_depth_dose.h | 24 +- src/plastimatch/dose/rt_dij.cxx | 57 ++ src/plastimatch/dose/rt_dij.h | 48 + src/plastimatch/dose/rt_dose.cxx | 1033 ++++++++----------- src/plastimatch/dose/rt_dose.h | 28 +- src/plastimatch/dose/rt_dose_timing.h | 39 + src/plastimatch/dose/rt_lut.cxx | 36 +- src/plastimatch/dose/rt_mebs.cxx | 308 +++--- src/plastimatch/dose/rt_mebs.h | 49 +- src/plastimatch/dose/rt_parms.cxx | 80 +- src/plastimatch/dose/rt_parms.h | 3 + src/plastimatch/dose/rt_plan.cxx | 848 ++++++---------- src/plastimatch/dose/rt_plan.h | 24 +- src/plastimatch/dose/rt_sigma.cxx | 264 ++--- src/plastimatch/dose/rt_sigma.h | 12 +- src/plastimatch/dose/rt_spot_map.cxx | 55 + src/plastimatch/dose/rt_spot_map.h | 43 + src/plastimatch/dose/wed_parms.h | 7 +- src/plastimatch/opencl/CMakeLists.txt | 0 src/plastimatch/opencl/autotune_opencl.cxx | 0 src/plastimatch/opencl/autotune_opencl.h | 0 src/plastimatch/reconstruct/drr.cxx | 7 +- src/plastimatch/reconstruct/drr_opencl.cxx | 5 - src/plastimatch/reconstruct/fdk.cxx | 2 +- src/plastimatch/register/CMakeLists.txt | 76 +- src/plastimatch/register/bspline.cxx | 149 +-- src/plastimatch/register/bspline.h | 3 +- src/plastimatch/register/bspline_gm.h | 0 src/plastimatch/register/bspline_gm.txx | 6 +- src/plastimatch/register/bspline_loop.txx | 34 +- src/plastimatch/register/bspline_mi.cxx | 365 ++----- src/plastimatch/register/bspline_mi.h | 0 src/plastimatch/register/bspline_mi.txx | 16 +- src/plastimatch/register/bspline_mi_hist.h | 77 -- src/plastimatch/register/bspline_mse.cxx | 55 +- src/plastimatch/register/bspline_mse.h | 0 src/plastimatch/register/bspline_mse.txx | 13 +- src/plastimatch/register/bspline_optimize.cxx | 84 +- src/plastimatch/register/bspline_optimize.h | 10 +- .../register/bspline_optimize_lbfgsb.cxx | 14 +- .../register/bspline_optimize_liblbfgs.cxx | 2 +- .../register/bspline_optimize_nlopt.cxx | 2 +- .../register/bspline_optimize_steepest.cxx | 47 +- src/plastimatch/register/bspline_parms.cxx | 18 +- src/plastimatch/register/bspline_parms.h | 58 +- src/plastimatch/register/bspline_regularize.cxx | 2 - src/plastimatch/register/bspline_regularize.h | 2 - src/plastimatch/register/bspline_score.cxx | 43 +- src/plastimatch/register/bspline_score.h | 40 +- src/plastimatch/register/bspline_stage.cxx | 277 +++--- src/plastimatch/register/bspline_stage.h | 2 - src/plastimatch/register/bspline_state.cxx | 218 ++-- src/plastimatch/register/bspline_state.h | 35 +- src/plastimatch/register/cuda/CMakeLists.txt | 3 - src/plastimatch/register/cuda/bspline_cuda.cu | 19 +- src/plastimatch/register/cuda/bspline_cuda.cxx | 60 +- src/plastimatch/register/cuda/bspline_cuda.h | 10 +- src/plastimatch/register/gpuit_demons.cxx | 6 +- .../register/{viscous.h => groupwise_parms.cxx} | 14 +- .../register/{bspline_gm.h => groupwise_parms.h} | 12 +- src/plastimatch/register/histogram.cxx | 33 + src/plastimatch/register/histogram.h | 38 + src/plastimatch/register/itk_align_center.cxx | 23 +- src/plastimatch/register/itk_demons.cxx | 81 +- src/plastimatch/register/itk_registration.cxx | 71 +- .../register/itk_registration_observer.cxx | 25 +- .../{bspline_mi_hist.cxx => joint_histogram.cxx} | 260 ++++- src/plastimatch/register/joint_histogram.h | 50 + src/plastimatch/register/landmark_warp.cxx | 2 +- src/plastimatch/register/metric_parms.cxx | 54 + src/plastimatch/register/metric_parms.h | 28 + ...spline_optimize_steepest.h => metric_state.cxx} | 32 +- src/plastimatch/register/metric_state.h | 39 + src/plastimatch/register/process_parms.cxx | 12 +- src/plastimatch/register/rbf_gauss.cxx | 19 +- src/plastimatch/register/registration.cxx | 65 +- src/plastimatch/register/registration.h | 4 +- src/plastimatch/register/registration_data.cxx | 282 +++++- src/plastimatch/register/registration_data.h | 55 +- .../register/registration_metric_type.h | 18 - src/plastimatch/register/registration_parms.cxx | 230 +---- src/plastimatch/register/registration_parms.h | 16 +- src/plastimatch/register/registration_resample.cxx | 0 src/plastimatch/register/registration_resample.h | 0 .../register/registration_similarity_data.h | 24 + src/plastimatch/register/registration_util.cxx | 44 + .../register/{itk_demons.h => registration_util.h} | 17 +- src/plastimatch/register/shared_parms.cxx | 17 + src/plastimatch/register/shared_parms.h | 8 +- ..._metric_type.cxx => similarity_metric_type.cxx} | 18 +- src/plastimatch/register/similarity_metric_type.h | 19 + src/plastimatch/register/stage_parms.cxx | 4 - src/plastimatch/register/stage_parms.h | 9 +- .../register/translation_grid_search.cxx | 180 ++-- src/plastimatch/register/translation_mi.cxx | 21 +- src/plastimatch/register/translation_mi.h | 3 +- src/plastimatch/register/translation_mse.cxx | 8 +- src/plastimatch/register/translation_mse.h | 3 +- src/plastimatch/segment/autolabel_parms.cxx | 4 +- src/plastimatch/segment/autolabel_parms.h | 1 + src/plastimatch/segment/mabs.cxx | 12 +- src/plastimatch/segment/mabs.h | 0 src/plastimatch/segment/mabs_atlas_selection.cxx | 4 +- src/plastimatch/segment/mabs_parms.cxx | 2 + src/plastimatch/segment/mabs_stats.cxx | 0 src/plastimatch/segment/mabs_stats.h | 0 src/plastimatch/standalone/CMakeLists.txt | 6 - src/plastimatch/standalone/YKThreadRegi.cpp | 4 - src/plastimatch/standalone/bspline_main.cxx | 49 +- src/plastimatch/standalone/bspline_opts.cxx | 5 +- src/plastimatch/standalone/bspline_opts.h | 3 + src/plastimatch/standalone/check_grad.cxx | 37 +- src/plastimatch/standalone/dlib_train.cxx | 0 src/plastimatch/standalone/drr_main.cxx | 6 +- src/plastimatch/standalone/gamma_gui.cpp | 317 ++++++ src/plastimatch/standalone/gamma_gui.h | 3 + src/plastimatch/standalone/gamma_gui.ui | 23 + src/plastimatch/standalone/hnd_to_pfm.cxx | 0 src/plastimatch/standalone/opencl_probe.cxx | 0 src/plastimatch/standalone/opencl_probe.h | 0 src/plastimatch/standalone/qt_util.cxx | 2 +- src/plastimatch/standalone/qt_util.h | 2 +- src/plastimatch/standalone/shuffle_mha_main.cxx | 0 src/plastimatch/standalone/sobp_main.cxx | 18 +- src/plastimatch/standalone/vf_invert_main.cxx | 0 src/plastimatch/sys/CMakeLists.txt | 5 +- src/plastimatch/sys/compiler_warnings.h | 0 src/plastimatch/sys/dlib_threads.cxx | 0 src/plastimatch/sys/dlib_threads.h | 0 src/plastimatch/sys/logfile.cxx | 0 src/plastimatch/sys/plm_endian.cxx | 0 src/plastimatch/sys/plm_macros.h | 0 src/plastimatch/sys/plm_math.h | 29 +- src/plastimatch/sys/plm_return_code.h | 0 src/plastimatch/sys/plm_sleep.cxx | 0 src/plastimatch/sys/plm_sleep.h | 0 src/plastimatch/sys/plm_timer.cxx | 7 + src/plastimatch/sys/plm_timer.h | 1 + src/plastimatch/sys/smart_pointer.h | 0 src/plastimatch/sys/string_util.cxx | 37 +- src/plastimatch/sys/string_util.h | 6 +- src/plastimatch/test/api_test.cxx | 0 src/plastimatch/test/cpp_eps_test.cxx | 0 src/plastimatch/test/cpp_limits_test.cxx | 0 src/plastimatch/test/cpp_overflow_test.cxx | 0 src/plastimatch/test/cpp_sizeof_test.cxx | 0 src/plastimatch/test/cpp_template_test.cxx | 17 +- src/plastimatch/test/cuda/cuda_test.cu | 19 +- src/plastimatch/test/dcmtk_test.cxx | 0 src/plastimatch/test/dlib_test.cxx | 0 src/plastimatch/test/dlib_thread_test.cxx | 0 src/plastimatch/test/gabor_test.cxx | 0 src/plastimatch/test/itk_test.cxx | 0 src/plastimatch/test/itk_test_directions.cxx | 0 src/plastimatch/test/itk_thread_test.cxx | 0 src/plastimatch/test/libyaml_test.cxx | 0 src/plastimatch/test/plm_restart_test.cxx | 0 src/plastimatch/test/rapidjson_test.cxx | 0 src/plastimatch/test/rtplan_test.cxx | 0 src/plastimatch/test/smartp_test_i.cxx | 0 src/plastimatch/test/smartp_test_ii.cxx | 0 src/plastimatch/test/yamlcpp_test.cxx | 0 src/plastimatch/util/CMakeLists.txt | 5 +- src/plastimatch/util/dicom_sro_save.cxx | 0 src/plastimatch/util/dicom_sro_save.h | 0 src/plastimatch/util/distance_map.cxx | 26 +- src/plastimatch/util/distance_map.h | 7 + src/plastimatch/util/gabor.cxx | 0 src/plastimatch/util/gabor.h | 0 src/plastimatch/util/hausdorff_distance.cxx | 13 +- src/plastimatch/util/hausdorff_distance.h | 4 + src/plastimatch/util/image_boundary.cxx | 45 +- src/plastimatch/util/image_boundary.h | 15 +- src/plastimatch/util/image_center.cxx | 0 src/plastimatch/util/image_center.h | 0 src/plastimatch/util/itk_adjust.cxx | 73 -- src/plastimatch/util/itk_distance_map.cxx | 0 src/plastimatch/util/itk_threshold.cxx | 0 src/plastimatch/util/itk_threshold.h | 0 src/plastimatch/util/vf_invert.cxx | 0 src/plastimatch/util/vf_invert.h | 0 src/plastimatch/util/volume_adjust.cxx | 40 + src/plastimatch/util/volume_adjust.h | 15 + 430 files changed, 7497 insertions(+), 4949 deletions(-) mode change 100755 => 100644 INSTALL.TXT mode change 100755 => 100644 LICENSE.TXT mode change 100755 => 100644 README.TXT copy Testing/Data/{plm-reg-stiffness-a.txt => plm-bsp-dmap-k.txt} (54%) mode change 100755 => 100644 create mode 100755 Testing/Data/plm-reg-gw-a.txt mode change 100644 => 100755 Testing/Data/proton-dose-1.txt rename Testing/Data/{proton-dose-5g.txt => proton-dose-5d.txt} (92%) mode change 100644 => 100755 copy Testing/Data/{proton-dose-5a.txt => proton-dose-7a.txt} (67%) mode change 100644 => 100755 create mode 100644 cmake/FindKaze.cmake mode change 100644 => 100755 doc/NOTES.TXT delete mode 100755 run_lcov.sh mode change 100755 => 100644 src/CMakeLists.txt mode change 100755 => 100644 src/plastimatch/CMakeLists.txt mode change 100755 => 100644 src/plastimatch/COPYRIGHT.TXT mode change 100755 => 100644 src/plastimatch/Doxyfile.in mode change 100644 => 100755 src/plastimatch/base/CMakeLists.txt mode change 100644 => 100755 src/plastimatch/base/aperture.cxx mode change 100644 => 100755 src/plastimatch/base/aperture.h mode change 100755 => 100644 src/plastimatch/base/dcmtk_config.h mode change 100755 => 100644 src/plastimatch/base/dcmtk_file.cxx mode change 100755 => 100644 src/plastimatch/base/dcmtk_file.h mode change 100755 => 100644 src/plastimatch/base/dcmtk_image.cxx mode change 100755 => 100644 src/plastimatch/base/dcmtk_metadata.cxx mode change 100755 => 100644 src/plastimatch/base/dcmtk_metadata.h mode change 100755 => 100644 src/plastimatch/base/dcmtk_rdd.cxx mode change 100755 => 100644 src/plastimatch/base/dcmtk_rdd.h mode change 100755 => 100644 src/plastimatch/base/dcmtk_rt_study.cxx mode change 100755 => 100644 src/plastimatch/base/dcmtk_rt_study.h mode change 100755 => 100644 src/plastimatch/base/dcmtk_rtdose.cxx mode change 100755 => 100644 src/plastimatch/base/dcmtk_rtplan.cxx mode change 100755 => 100644 src/plastimatch/base/dcmtk_rtss.cxx mode change 100755 => 100644 src/plastimatch/base/dcmtk_rtss.h mode change 100755 => 100644 src/plastimatch/base/dcmtk_series.cxx mode change 100755 => 100644 src/plastimatch/base/dcmtk_slice_data.h mode change 100755 => 100644 src/plastimatch/base/dcmtk_uid.cxx mode change 100755 => 100644 src/plastimatch/base/dcmtk_uid.h mode change 100755 => 100644 src/plastimatch/base/dcmtk_util.cxx mode change 100755 => 100644 src/plastimatch/base/dcmtk_util.h mode change 100755 => 100644 src/plastimatch/base/dicom.dic mode change 100755 => 100644 src/plastimatch/base/dicom_util.cxx mode change 100755 => 100644 src/plastimatch/base/dicom_util.h mode change 100755 => 100644 src/plastimatch/base/direction_cosines.cxx mode change 100755 => 100644 src/plastimatch/base/direction_cosines.h mode change 100755 => 100644 src/plastimatch/base/direction_matrices.cxx mode change 100755 => 100644 src/plastimatch/base/direction_matrices.h mode change 100755 => 100644 src/plastimatch/base/float_pair_list.cxx mode change 100755 => 100644 src/plastimatch/base/float_pair_list.h mode change 100755 => 100644 src/plastimatch/base/gaussian.cxx mode change 100755 => 100644 src/plastimatch/base/gaussian.h mode change 100755 => 100644 src/plastimatch/base/gdcm1_dose.cxx mode change 100755 => 100644 src/plastimatch/base/gdcm1_dose.h mode change 100755 => 100644 src/plastimatch/base/gdcm1_file.cxx mode change 100755 => 100644 src/plastimatch/base/gdcm1_file.h mode change 100755 => 100644 src/plastimatch/base/gdcm1_rdd.cxx mode change 100755 => 100644 src/plastimatch/base/gdcm1_rdd.h mode change 100755 => 100644 src/plastimatch/base/gdcm1_rtss.cxx mode change 100755 => 100644 src/plastimatch/base/gdcm1_rtss.h mode change 100755 => 100644 src/plastimatch/base/gdcm1_series.cxx mode change 100755 => 100644 src/plastimatch/base/gdcm1_series.h mode change 100755 => 100644 src/plastimatch/base/gdcm1_series_helper_2.cxx mode change 100755 => 100644 src/plastimatch/base/gdcm1_series_helper_2.h mode change 100755 => 100644 src/plastimatch/base/gdcm1_util.cxx mode change 100755 => 100644 src/plastimatch/base/gdcm1_util.h mode change 100755 => 100644 src/plastimatch/base/gdcm2_util.cxx mode change 100755 => 100644 src/plastimatch/base/gdcm2_util.h mode change 100644 => 100755 src/plastimatch/base/hnd_io.cxx mode change 100644 => 100755 src/plastimatch/base/interpolate.cxx mode change 100644 => 100755 src/plastimatch/base/interpolate.h mode change 100755 => 100644 src/plastimatch/base/itkClampCastImageFilter.h mode change 100755 => 100644 src/plastimatch/base/itkClampCastImageFilter.txx create mode 100644 src/plastimatch/base/itk_bbox.cxx copy src/plastimatch/base/{dcmtk_rtdose.h => itk_bbox.h} (64%) mode change 100755 => 100644 src/plastimatch/base/itk_dicom_load.cxx mode change 100755 => 100644 src/plastimatch/base/itk_dicom_load.h mode change 100755 => 100644 src/plastimatch/base/itk_dicom_save.cxx mode change 100755 => 100644 src/plastimatch/base/itk_dicom_save.h mode change 100755 => 100644 src/plastimatch/base/itk_directions.cxx mode change 100755 => 100644 src/plastimatch/base/itk_directions.h mode change 100755 => 100644 src/plastimatch/base/itk_image_load_char.cxx mode change 100755 => 100644 src/plastimatch/base/itk_image_load_double.cxx mode change 100755 => 100644 src/plastimatch/base/itk_image_type.h mode change 100755 => 100644 src/plastimatch/base/itk_metadata.cxx mode change 100755 => 100644 src/plastimatch/base/itk_metadata.h mode change 100755 => 100644 src/plastimatch/base/itk_pointset.cxx mode change 100755 => 100644 src/plastimatch/base/itk_pointset.h mode change 100755 => 100644 src/plastimatch/base/plm_file_format.cxx mode change 100755 => 100644 src/plastimatch/base/plm_file_format.h mode change 100755 => 100644 src/plastimatch/base/plm_image_type.cxx mode change 100644 => 100755 src/plastimatch/base/proj_matrix.cxx mode change 100644 => 100755 src/plastimatch/base/proj_matrix.h mode change 100644 => 100755 src/plastimatch/base/proj_volume.cxx mode change 100644 => 100755 src/plastimatch/base/proj_volume.h mode change 100755 => 100644 src/plastimatch/base/pwlut.cxx mode change 100755 => 100644 src/plastimatch/base/pwlut.h mode change 100644 => 100755 src/plastimatch/base/rpl_volume.cxx mode change 100644 => 100755 src/plastimatch/base/rpl_volume.h create mode 100755 src/plastimatch/base/rpl_volume_lut.cxx create mode 100755 src/plastimatch/base/rpl_volume_lut.h mode change 100755 => 100644 src/plastimatch/base/rt_study_metadata.cxx mode change 100755 => 100644 src/plastimatch/base/rt_study_metadata.h mode change 100755 => 100644 src/plastimatch/base/rt_study_p.h mode change 100755 => 100644 src/plastimatch/base/rtplan_control_pt.h mode change 100755 => 100644 src/plastimatch/base/slice_list.cxx mode change 100755 => 100644 src/plastimatch/base/slice_list.h mode change 100755 => 100644 src/plastimatch/base/thumbnail.cxx mode change 100755 => 100644 src/plastimatch/base/thumbnail.h mode change 100755 => 100644 src/plastimatch/base/vf.cxx mode change 100755 => 100644 src/plastimatch/base/vf_convolve.cxx create mode 100644 src/plastimatch/base/volume_boundary_behavior.h mode change 100755 => 100644 src/plastimatch/base/volume_fill.cxx mode change 100755 => 100644 src/plastimatch/base/volume_fill.h mode change 100755 => 100644 src/plastimatch/base/volume_grad.cxx mode change 100755 => 100644 src/plastimatch/base/volume_grad.h mode change 100755 => 100644 src/plastimatch/base/volume_limit.h mode change 100755 => 100644 src/plastimatch/base/volume_macros.h mode change 100755 => 100644 src/plastimatch/base/volume_resample.cxx mode change 100755 => 100644 src/plastimatch/base/volume_stats.cxx mode change 100755 => 100644 src/plastimatch/base/volume_stats.h mode change 100755 => 100644 src/plastimatch/base/xform_convert.cxx mode change 100755 => 100644 src/plastimatch/base/xform_convert.h mode change 100755 => 100644 src/plastimatch/base/xform_legacy.cxx mode change 100755 => 100644 src/plastimatch/base/xform_legacy.h mode change 100755 => 100644 src/plastimatch/base/xio_ct.cxx mode change 100755 => 100644 src/plastimatch/base/xio_ct_transform.cxx mode change 100755 => 100644 src/plastimatch/base/xio_ct_transform.h mode change 100755 => 100644 src/plastimatch/base/xio_demographic.cxx mode change 100755 => 100644 src/plastimatch/base/xio_demographic.h mode change 100755 => 100644 src/plastimatch/base/xio_dir.cxx mode change 100755 => 100644 src/plastimatch/base/xio_patient.cxx mode change 100755 => 100644 src/plastimatch/base/xio_patient.h mode change 100755 => 100644 src/plastimatch/base/xio_structures.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_add.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_adjust.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_adjust.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_autolabel.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_autolabel.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_autolabel_train.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_autolabel_train.h create mode 100644 src/plastimatch/cli/pcmd_bbox.cxx copy src/plastimatch/cli/{pcmd_drr.h => pcmd_bbox.h} (73%) mode change 100755 => 100644 mode change 100755 => 100644 src/plastimatch/cli/pcmd_benchmark.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_benchmark.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_boundary.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_boundary.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_compare.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_compare.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_compose.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_compose.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_crop.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_crop.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_dice.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_dice.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_diff.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_diff.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_dmap.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_dmap.h create mode 100644 src/plastimatch/cli/pcmd_dose.cxx copy src/plastimatch/cli/{pcmd_add.h => pcmd_dose.h} (74%) mode change 100755 => 100644 mode change 100755 => 100644 src/plastimatch/cli/pcmd_drr.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_drr.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_dvh.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_dvh.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_filter.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_filter.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_gamma.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_gamma.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_header.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_header.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_mabs.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_mabs.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_mask.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_mask.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_probe.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_scale.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_segment.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_segment.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_sift.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_stats.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_stats.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_synth.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_synth.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_synth_vf.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_synth_vf.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_threshold.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_threshold.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_thumbnail.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_thumbnail.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_union.h copy src/plastimatch/{standalone/vf_invert_main.cxx => cli/pcmd_vf_invert.cxx} (88%) mode change 100755 => 100644 copy src/plastimatch/cli/{pcmd_benchmark.h => pcmd_vf_invert.h} (71%) mode change 100755 => 100644 mode change 100755 => 100644 src/plastimatch/cli/pcmd_warp.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_warp.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_warp_pointset.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_xf_convert.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_xf_convert.h mode change 100755 => 100644 src/plastimatch/cli/pcmd_xio_dvh.cxx mode change 100755 => 100644 src/plastimatch/cli/pcmd_xio_dvh.h mode change 100755 => 100644 src/plastimatch/clp/CMakeLists.txt mode change 100755 => 100644 src/plastimatch/clp/plm_clp.cxx mode change 100755 => 100644 src/plastimatch/clp/plm_clp.h mode change 100755 => 100644 src/plastimatch/cuda/cuda_probe.h mode change 100644 => 100755 src/plastimatch/dose/CMakeLists.txt mode change 100644 => 100755 src/plastimatch/dose/dose_volume_functions.cxx mode change 100644 => 100755 src/plastimatch/dose/dose_volume_functions.h mode change 100644 => 100755 src/plastimatch/dose/rt_beam.cxx mode change 100644 => 100755 src/plastimatch/dose/rt_beam.h copy src/plastimatch/dose/{bragg_curve.h => rt_beam_model.cxx} (55%) mode change 100644 => 100755 create mode 100755 src/plastimatch/dose/rt_beam_model.h mode change 100644 => 100755 src/plastimatch/dose/rt_depth_dose.h create mode 100755 src/plastimatch/dose/rt_dij.cxx create mode 100755 src/plastimatch/dose/rt_dij.h mode change 100644 => 100755 src/plastimatch/dose/rt_dose.cxx mode change 100644 => 100755 src/plastimatch/dose/rt_dose.h create mode 100644 src/plastimatch/dose/rt_dose_timing.h mode change 100644 => 100755 src/plastimatch/dose/rt_mebs.cxx mode change 100644 => 100755 src/plastimatch/dose/rt_mebs.h mode change 100644 => 100755 src/plastimatch/dose/rt_parms.cxx mode change 100644 => 100755 src/plastimatch/dose/rt_plan.cxx mode change 100644 => 100755 src/plastimatch/dose/rt_sigma.cxx create mode 100755 src/plastimatch/dose/rt_spot_map.cxx create mode 100755 src/plastimatch/dose/rt_spot_map.h mode change 100644 => 100755 src/plastimatch/dose/wed_parms.h mode change 100755 => 100644 src/plastimatch/opencl/CMakeLists.txt mode change 100755 => 100644 src/plastimatch/opencl/autotune_opencl.cxx mode change 100755 => 100644 src/plastimatch/opencl/autotune_opencl.h mode change 100644 => 100755 src/plastimatch/reconstruct/fdk.cxx mode change 100755 => 100644 src/plastimatch/register/bspline_gm.h mode change 100755 => 100644 src/plastimatch/register/bspline_mi.h delete mode 100755 src/plastimatch/register/bspline_mi_hist.h mode change 100755 => 100644 src/plastimatch/register/bspline_mse.h mode change 100755 => 100644 src/plastimatch/register/cuda/CMakeLists.txt copy src/plastimatch/register/{viscous.h => groupwise_parms.cxx} (70%) copy src/plastimatch/register/{bspline_gm.h => groupwise_parms.h} (62%) mode change 100755 => 100644 create mode 100644 src/plastimatch/register/histogram.cxx create mode 100644 src/plastimatch/register/histogram.h rename src/plastimatch/register/{bspline_mi_hist.cxx => joint_histogram.cxx} (67%) mode change 100755 => 100644 create mode 100644 src/plastimatch/register/joint_histogram.h create mode 100644 src/plastimatch/register/metric_parms.cxx create mode 100644 src/plastimatch/register/metric_parms.h copy src/plastimatch/register/{bspline_optimize_steepest.h => metric_state.cxx} (51%) create mode 100644 src/plastimatch/register/metric_state.h delete mode 100755 src/plastimatch/register/registration_metric_type.h mode change 100755 => 100644 src/plastimatch/register/registration_resample.cxx mode change 100755 => 100644 src/plastimatch/register/registration_resample.h create mode 100644 src/plastimatch/register/registration_similarity_data.h create mode 100644 src/plastimatch/register/registration_util.cxx copy src/plastimatch/register/{itk_demons.h => registration_util.h} (55%) mode change 100755 => 100644 src/plastimatch/register/shared_parms.cxx mode change 100755 => 100644 src/plastimatch/register/shared_parms.h rename src/plastimatch/register/{registration_metric_type.cxx => similarity_metric_type.cxx} (59%) create mode 100644 src/plastimatch/register/similarity_metric_type.h mode change 100755 => 100644 src/plastimatch/segment/mabs.cxx mode change 100755 => 100644 src/plastimatch/segment/mabs.h mode change 100755 => 100644 src/plastimatch/segment/mabs_stats.cxx mode change 100755 => 100644 src/plastimatch/segment/mabs_stats.h mode change 100755 => 100644 src/plastimatch/standalone/dlib_train.cxx mode change 100644 => 100755 src/plastimatch/standalone/drr_main.cxx mode change 100755 => 100644 src/plastimatch/standalone/hnd_to_pfm.cxx mode change 100755 => 100644 src/plastimatch/standalone/opencl_probe.cxx mode change 100755 => 100644 src/plastimatch/standalone/opencl_probe.h mode change 100755 => 100644 src/plastimatch/standalone/shuffle_mha_main.cxx mode change 100755 => 100644 src/plastimatch/standalone/vf_invert_main.cxx mode change 100755 => 100644 src/plastimatch/sys/compiler_warnings.h mode change 100755 => 100644 src/plastimatch/sys/dlib_threads.cxx mode change 100755 => 100644 src/plastimatch/sys/dlib_threads.h mode change 100755 => 100644 src/plastimatch/sys/logfile.cxx mode change 100755 => 100644 src/plastimatch/sys/plm_endian.cxx mode change 100755 => 100644 src/plastimatch/sys/plm_macros.h mode change 100644 => 100755 src/plastimatch/sys/plm_math.h mode change 100755 => 100644 src/plastimatch/sys/plm_return_code.h mode change 100755 => 100644 src/plastimatch/sys/plm_sleep.cxx mode change 100755 => 100644 src/plastimatch/sys/plm_sleep.h mode change 100755 => 100644 src/plastimatch/sys/smart_pointer.h mode change 100755 => 100644 src/plastimatch/sys/string_util.cxx mode change 100755 => 100644 src/plastimatch/test/api_test.cxx mode change 100755 => 100644 src/plastimatch/test/cpp_eps_test.cxx mode change 100755 => 100644 src/plastimatch/test/cpp_limits_test.cxx mode change 100755 => 100644 src/plastimatch/test/cpp_overflow_test.cxx mode change 100755 => 100644 src/plastimatch/test/cpp_sizeof_test.cxx mode change 100755 => 100644 src/plastimatch/test/cpp_template_test.cxx mode change 100755 => 100644 src/plastimatch/test/dcmtk_test.cxx mode change 100755 => 100644 src/plastimatch/test/dlib_test.cxx mode change 100755 => 100644 src/plastimatch/test/dlib_thread_test.cxx mode change 100755 => 100644 src/plastimatch/test/gabor_test.cxx mode change 100755 => 100644 src/plastimatch/test/itk_test.cxx mode change 100755 => 100644 src/plastimatch/test/itk_test_directions.cxx mode change 100755 => 100644 src/plastimatch/test/itk_thread_test.cxx mode change 100755 => 100644 src/plastimatch/test/libyaml_test.cxx mode change 100755 => 100644 src/plastimatch/test/plm_restart_test.cxx mode change 100755 => 100644 src/plastimatch/test/rapidjson_test.cxx mode change 100755 => 100644 src/plastimatch/test/rtplan_test.cxx mode change 100755 => 100644 src/plastimatch/test/smartp_test_i.cxx mode change 100755 => 100644 src/plastimatch/test/smartp_test_ii.cxx mode change 100755 => 100644 src/plastimatch/test/yamlcpp_test.cxx mode change 100755 => 100644 src/plastimatch/util/dicom_sro_save.cxx mode change 100755 => 100644 src/plastimatch/util/dicom_sro_save.h mode change 100755 => 100644 src/plastimatch/util/distance_map.cxx mode change 100755 => 100644 src/plastimatch/util/distance_map.h mode change 100755 => 100644 src/plastimatch/util/gabor.cxx mode change 100755 => 100644 src/plastimatch/util/gabor.h mode change 100755 => 100644 src/plastimatch/util/image_boundary.cxx mode change 100755 => 100644 src/plastimatch/util/image_boundary.h mode change 100755 => 100644 src/plastimatch/util/image_center.cxx mode change 100755 => 100644 src/plastimatch/util/image_center.h mode change 100755 => 100644 src/plastimatch/util/itk_adjust.cxx mode change 100755 => 100644 src/plastimatch/util/itk_distance_map.cxx mode change 100755 => 100644 src/plastimatch/util/itk_threshold.cxx mode change 100755 => 100644 src/plastimatch/util/itk_threshold.h mode change 100755 => 100644 src/plastimatch/util/vf_invert.cxx mode change 100755 => 100644 src/plastimatch/util/vf_invert.h create mode 100644 src/plastimatch/util/volume_adjust.cxx create mode 100644 src/plastimatch/util/volume_adjust.h -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/plastimatch.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit