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commit 3a669c4b39cca7f81f04f920ea39ef3624d3e138 Author: Andreas Tille <[email protected]> Date: Tue Nov 28 22:11:29 2017 +0100 Fix hdf5 includes --- debian/patches/fix_hdf5_includes.patch | 126 +++++++++++++++++++++++++++++++++ debian/patches/series | 1 + 2 files changed, 127 insertions(+) diff --git a/debian/patches/fix_hdf5_includes.patch b/debian/patches/fix_hdf5_includes.patch new file mode 100644 index 0000000..56110cd --- /dev/null +++ b/debian/patches/fix_hdf5_includes.patch @@ -0,0 +1,126 @@ +Author: Christian Seiler <[email protected]> +Last-Update: Tue, 28 Nov 2017 22:00:48 +0100 +Description: Fix hdf5 includes. + --> https://lists.debian.org/debian-mentors/2017/11/msg00227.html + +--- a/gatb-core/src/gatb/tools/math/LargeInt.hpp ++++ b/gatb-core/src/gatb/tools/math/LargeInt.hpp +@@ -35,7 +35,7 @@ + #include <stdint.h> + #include <algorithm> + #include <iostream> +-#include <hdf5/hdf5.h> ++#include <hdf5.h> + + #include <gatb/system/api/Exception.hpp> + #include <gatb/system/api/config.hpp> +--- a/gatb-core/src/gatb/tools/math/NativeInt128.hpp ++++ b/gatb-core/src/gatb/tools/math/NativeInt128.hpp +@@ -33,7 +33,7 @@ + /********************************************************************************/ + + #include <iostream> +-#include <hdf5/hdf5.h> ++#include <hdf5.h> + + #include <gatb/system/api/types.hpp> + #include <gatb/tools/misc/api/Abundance.hpp> +--- a/gatb-core/src/gatb/tools/math/NativeInt16.hpp ++++ b/gatb-core/src/gatb/tools/math/NativeInt16.hpp +@@ -31,7 +31,7 @@ + #include <iostream> + #include <gatb/system/api/types.hpp> + #include <gatb/tools/misc/api/Abundance.hpp> +-#include <hdf5/hdf5.h> ++#include <hdf5.h> + + /********************************************************************************/ + namespace gatb { +--- a/gatb-core/src/gatb/tools/math/NativeInt32.hpp ++++ b/gatb-core/src/gatb/tools/math/NativeInt32.hpp +@@ -31,7 +31,7 @@ + #include <iostream> + #include <gatb/system/api/types.hpp> + #include <gatb/tools/misc/api/Abundance.hpp> +-#include <hdf5/hdf5.h> ++#include <hdf5.h> + + /********************************************************************************/ + namespace gatb { +--- a/gatb-core/src/gatb/tools/math/NativeInt64.hpp ++++ b/gatb-core/src/gatb/tools/math/NativeInt64.hpp +@@ -31,7 +31,7 @@ + #include <iostream> + #include <gatb/system/api/types.hpp> + #include <gatb/tools/misc/api/Abundance.hpp> +-#include <hdf5/hdf5.h> ++#include <hdf5.h> + + extern const unsigned char revcomp_4NT[]; + extern const unsigned char comp_NT []; +--- a/gatb-core/src/gatb/tools/math/NativeInt8.hpp ++++ b/gatb-core/src/gatb/tools/math/NativeInt8.hpp +@@ -31,7 +31,7 @@ + #include <iostream> + #include <gatb/system/api/types.hpp> + #include <gatb/tools/misc/api/Abundance.hpp> +-#include <hdf5/hdf5.h> ++#include <hdf5.h> + + /********************************************************************************/ + namespace gatb { +--- a/gatb-core/src/gatb/tools/misc/api/Abundance.hpp ++++ b/gatb-core/src/gatb/tools/misc/api/Abundance.hpp +@@ -31,7 +31,7 @@ + /********************************************************************************/ + + #include <sys/types.h> +-#include <hdf5/hdf5.h> ++#include <hdf5.h> + + /********************************************************************************/ + namespace gatb { +--- a/gatb-core/src/gatb/tools/misc/api/IHistogram.hpp ++++ b/gatb-core/src/gatb/tools/misc/api/IHistogram.hpp +@@ -28,7 +28,7 @@ + + #include <gatb/system/api/ISmartPointer.hpp> + #include <gatb/tools/storage/impl/Storage.hpp> +-#include <hdf5/hdf5.h> ++#include <hdf5.h> + + /********************************************************************************/ + namespace gatb { +--- a/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp ++++ b/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp +@@ -40,7 +40,7 @@ + #include <string> + #include <vector> + #include <stdarg.h> +-#include <hdf5/hdf5.h> ++#include <hdf5.h> + + /********************************************************************************/ + namespace gatb { +--- a/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp ++++ b/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp +@@ -40,7 +40,7 @@ + #include <string> + #include <vector> + #include <stdarg.h> +-#include <hdf5/hdf5.h> ++#include <hdf5.h> + + /********************************************************************************/ + namespace gatb { +--- a/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp ++++ b/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp +@@ -33,7 +33,7 @@ + #include <gatb/tools/storage/impl/CollectionHDF5.hpp> + #include <gatb/tools/storage/impl/CollectionHDF5Patch.hpp> + #include <gatb/system/impl/System.hpp> +-#include <hdf5/hdf5.h> ++#include <hdf5.h> + #include <sstream> + + /********************************************************************************/ diff --git a/debian/patches/series b/debian/patches/series index f8768ac..8f6d780 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -1 +1,2 @@ use_debian_packaged_hdf5.patch +fix_hdf5_includes.patch -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/gatb-core.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
