Sascha Steinbiss pushed to branch master at Debian Med / ariba
Commits: 47a54483 by Sascha Steinbiss at 2018-03-05T00:27:53+01:00 New upstream version 2.11.1+ds - - - - - 5782d00b by Sascha Steinbiss at 2018-03-05T00:27:56+01:00 Update upstream source from tag 'upstream/2.11.1+ds' Update to upstream version '2.11.1+ds' with Debian dir ff0b418043699d37a7b861a9dda03931f958203e - - - - - e8776406 by Sascha Steinbiss at 2018-03-05T09:08:00+01:00 new upstream release - - - - - 4 changed files: - .travis.yml - ariba/ref_genes_getter.py - debian/changelog - setup.py Changes: ===================================== .travis.yml ===================================== --- a/.travis.yml +++ b/.travis.yml @@ -8,9 +8,9 @@ addons: - libgfortran3 - libncurses5-dev python: - - "3.4" +- '3.4' sudo: false install: - - "source ./install_dependencies.sh" +- source ./install_dependencies.sh script: - - "python setup.py test" +- python setup.py test ===================================== ariba/ref_genes_getter.py ===================================== --- a/ariba/ref_genes_getter.py +++ b/ariba/ref_genes_getter.py @@ -41,7 +41,7 @@ class RefGenesGetter: def _get_card_versions(self, tmp_file): print('Getting available CARD versions') common.download_file('https://card.mcmaster.ca/download', tmp_file, max_attempts=self.max_download_attempts, sleep_time=self.sleep_time, verbose=True) - p = re.compile(r'''href="(/download/.*?broad.*?v([0-9]+\.[0-9]+\.[0-9]+)\.tar\.bz2)"''') + p = re.compile(r'''href="(/download/.*?broad.*?v([0-9]+\.[0-9]+\.[0-9]+)\.tar\.(gz|bz2))"''') versions = {} with open(tmp_file) as f: @@ -481,4 +481,3 @@ class RefGenesGetter: def run(self, outprefix): exec('self._get_from_' + self.ref_db + '(outprefix)') - ===================================== debian/changelog ===================================== --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,9 @@ +ariba (2.11.1+ds-1) unstable; urgency=medium + + * New upstream release. + + -- Sascha Steinbiss <sa...@debian.org> Mon, 05 Mar 2018 00:29:24 +0100 + ariba (2.11.0+ds-2) unstable; urgency=medium * Fix watchfile to not report non-release tags (with '-X' suffix). ===================================== setup.py ===================================== --- a/setup.py +++ b/setup.py @@ -55,7 +55,7 @@ vcfcall_mod = Extension( setup( ext_modules=[minimap_mod, fermilite_mod, vcfcall_mod], name='ariba', - version='2.11.0', + version='2.11.1', description='ARIBA: Antibiotic Resistance Identification By Assembly', packages = find_packages(), package_data={'ariba': ['test_run_data/*']}, View it on GitLab: https://salsa.debian.org/med-team/ariba/compare/c4e24edd67e121fd3df1c7414645977290807b37...e877640600d85c0064cf72c9c855d4ff688bd36a --- View it on GitLab: https://salsa.debian.org/med-team/ariba/compare/c4e24edd67e121fd3df1c7414645977290807b37...e877640600d85c0064cf72c9c855d4ff688bd36a You're receiving this email because of your account on salsa.debian.org.
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