Andreas Tille pushed to branch master at Debian Med / pbbam
Commits:
27a60c48 by Andreas Tille at 2018-09-06T06:41:03Z
Fix broken PATH
- - - - -
c1f1472d by Andreas Tille at 2018-09-06T09:17:02Z
Really fix broken command line
- - - - -
1 changed file:
- debian/rules
Changes:
=====================================
debian/rules
=====================================
@@ -27,6 +27,9 @@ override_dh_auto_test: $(subst .t.in,.deb.t,$(wildcard
tests/src/cram/pb*.t.in))
python tests/scripts/generate_data.py $(CURDIR)/tests/data
$(generated_data_dir)
# remove dfsg extension from test cases
sed -i -e 's/+dfsg//g' -e
's?\(/build/$(DEB_SOURCE)-[0-9.]\+\)/?\1+dfsg/?' tests/src/cram/*
+ # Fix broken PATH
+ synthetic_movie_all_path=`find $$PWD -name
synthetic_movie_all.subreadset.xml` ; \
+ sed -i -e
"s?.GENERATEDDATADIR/synthetic_movie_all.subreadset.xml?$${synthetic_movie_all_path}?"
tests/src/cram/pbbamify*
BINDIR=`dirname $$(find $$PWD -name pbmerge -type f -executable)`; \
LIBDIR=`find $$PWD -name lib -type d`; \
PATH="$$BINDIR:$(PATH)" LD_LIBRARY_PATH="$$LIBDIR:$(LD_LIBRARY_PATH)" \
View it on GitLab:
https://salsa.debian.org/med-team/pbbam/compare/74e5e404c02c35bc412d5b5e1baf5bca8edb39b6...c1f1472da5dd9df47113ec3db320919edaef93b3
--
View it on GitLab:
https://salsa.debian.org/med-team/pbbam/compare/74e5e404c02c35bc412d5b5e1baf5bca8edb39b6...c1f1472da5dd9df47113ec3db320919edaef93b3
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