Andreas Tille pushed to branch master at Debian Med / hisat2
Commits: cc6402c1 by Andreas Tille at 2018-09-24T09:25:08Z debhelper 11 - - - - - 26e6b5d0 by Andreas Tille at 2018-09-24T09:25:13Z Point Vcs fields to salsa.debian.org - - - - - 77a04d87 by Andreas Tille at 2018-09-24T09:25:13Z Standards-Version: 4.2.1 - - - - - d0fb9f40 by Andreas Tille at 2018-09-24T09:43:08Z Fix wrong path for Perl interpreter - - - - - 86b50013 by Andreas Tille at 2018-09-24T09:46:42Z Do not parse d/changelog - - - - - f04b5782 by Andreas Tille at 2018-09-24T09:51:34Z Attempt to point watch file to Github failed - - - - - 882bd2b4 by Andreas Tille at 2018-09-24T10:00:13Z Upload to unstable - - - - - 5 changed files: - debian/changelog - debian/compat - debian/control - debian/rules - debian/watch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,14 @@ +hisat2 (2.1.0-2) unstable; urgency=medium + + * Team upload. + * debhelper 11 + * Point Vcs fields to salsa.debian.org + * Standards-Version: 4.2.1 + * Fix wrong path for Perl interpreter + * Do not parse d/changelog + + -- Andreas Tille <[email protected]> Mon, 24 Sep 2018 11:52:06 +0200 + hisat2 (2.1.0-1) unstable; urgency=medium * Team upload ===================================== debian/compat ===================================== @@ -1 +1 @@ -10 +11 ===================================== debian/control ===================================== @@ -1,20 +1,23 @@ Source: hisat2 -Section: science -Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Michael R. Crusoe <[email protected]> -Build-Depends: debhelper (>= 10), +Section: science +Priority: optional +Build-Depends: debhelper (>= 11~), help2man, pandoc, python -Standards-Version: 4.1.0 -Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/hisat2.git -Vcs-Git: https://anonscm.debian.org/git/debian-med/hisat2.git +Standards-Version: 4.2.1 +Vcs-Browser: https://salsa.debian.org/med-team/hisat2 +Vcs-Git: https://salsa.debian.org/med-team/hisat2.git Homepage: https://ccb.jhu.edu/software/hisat2/index.shtml Package: hisat2 Architecture: amd64 kfreebsd-amd64 -Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends}, python +Depends: ${shlibs:Depends}, + ${misc:Depends}, + ${perl:Depends}, + python Description: graph-based alignment of short nucleotide reads to many genomes HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well ===================================== debian/rules ===================================== @@ -7,14 +7,16 @@ export TZ=UTC # for hardening you might like to uncomment this: export DEB_BUILD_MAINT_OPTIONS=hardening=+all -DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}') +include /usr/share/dpkg/default.mk + +DATE=$(shell date --date=@$(SOURCE_DATE_EPOCH) '+%d %B %Y') %: dh $@ override_dh_auto_build: - make BUILD_HOST='Debian ${DEBFLAVOR}' \ - BUILD_TIME="$(shell date --date=@`dpkg-parsechangelog --show-field Timestamp`)" \ + make BUILD_HOST='Debian' \ + BUILD_TIME="$(DATE)" \ all doc help2man ./hisat2 --no-info --name \ 'graph-based alignment of short nucleotide reads to many genomes, wrapper script' \ @@ -37,3 +39,8 @@ override_dh_auto_build: help2man ./hisat2-inspect-s --name 'HISAT2 index inspector, small index binary' \ --no-info > debian/hisat2-inspect-s.1 +override_dh_install: + dh_install + for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ + sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \ + done ===================================== debian/watch ===================================== @@ -1,3 +1,7 @@ version=4 opts="pasv,repack,compression=xz" \ ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-([0-9.]+)-source.zip + +# Download tarball is very strangely named on Github - this will not work +# https://github.com/infphilo/hisat2/releases .*/archive/@ANY_VERSION@@ARCHIVE_EXT@ + View it on GitLab: https://salsa.debian.org/med-team/hisat2/compare/94a6bf8aaee7c662e4cd4abe8a1b4ae54afdbca3...882bd2b4c324dbeb7e33af8e2641df156a444a47 -- View it on GitLab: https://salsa.debian.org/med-team/hisat2/compare/94a6bf8aaee7c662e4cd4abe8a1b4ae54afdbca3...882bd2b4c324dbeb7e33af8e2641df156a444a47 You're receiving this email because of your account on salsa.debian.org.
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