Andreas Tille pushed to branch master at Debian Med / libbio-coordinate-perl
Commits: e9b32509 by Andreas Tille at 2018-09-24T09:57:17Z debhelper 11 - - - - - 5982f0f0 by Andreas Tille at 2018-09-24T09:58:17Z Point Vcs fields to salsa.debian.org - - - - - 9d6a488f by Andreas Tille at 2018-09-24T09:58:17Z Standards-Version: 4.2.1 - - - - - 2264ace2 by Andreas Tille at 2018-09-24T10:08:25Z s/Conflicts/Breaks/ - - - - - e09668e1 by Andreas Tille at 2018-09-24T11:07:17Z Fix spelling - - - - - 5f6162d5 by Andreas Tille at 2018-09-24T11:08:18Z Upload to unstable - - - - - 5 changed files: - debian/changelog - debian/compat - debian/control - + debian/patches/series - + debian/patches/spelling.patch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +libbio-coordinate-perl (1.7.1-3) unstable; urgency=medium + + * debhelper 11 + * Point Vcs fields to salsa.debian.org + * Standards-Version: 4.2.1 + * s/Conflicts/Breaks/ + * Fix spelling + + -- Andreas Tille <[email protected]> Mon, 24 Sep 2018 13:07:25 +0200 + libbio-coordinate-perl (1.7.1-2) unstable; urgency=medium * Team upload ===================================== debian/compat ===================================== @@ -1 +1 @@ -10 +11 ===================================== debian/control ===================================== @@ -2,21 +2,22 @@ Source: libbio-coordinate-perl Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Andreas Tille <[email protected]> Section: perl +Testsuite: autopkgtest-pkg-perl Priority: optional -Build-Depends: debhelper (>= 10) +Build-Depends: debhelper (>= 11~) Build-Depends-Indep: bioperl (>= 1.7.1), - perl -Standards-Version: 4.1.0 -Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/libbio-coordinate-perl.git -Vcs-Git: https://anonscm.debian.org/git/debian-med/libbio-coordinate-perl.git + perl +Standards-Version: 4.2.1 +Vcs-Browser: https://salsa.debian.org/med-team/libbio-coordinate-perl +Vcs-Git: https://salsa.debian.org/med-team/libbio-coordinate-perl.git Homepage: https://metacpan.org/release/Bio-Coordinate -Testsuite: autopkgtest-pkg-perl Package: libbio-coordinate-perl Architecture: all -Depends: ${perl:Depends}, ${misc:Depends}, - bioperl (>= 1.7.1) -Conflicts: bioperl (<= 1.7.0) +Depends: ${perl:Depends}, + ${misc:Depends}, + bioperl (>= 1.7.1) +Breaks: bioperl (<= 1.7.0) Description: BioPerl modules for working with biological coordinates The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, ===================================== debian/patches/series ===================================== @@ -0,0 +1 @@ +spelling.patch ===================================== debian/patches/spelling.patch ===================================== @@ -0,0 +1,37 @@ +Description: Fix spelling +Author: Andreas Tille <[email protected]> +Last-Update: Mon, 24 Sep 2018 11:57:17 +0200 + +--- a/lib/Bio/Coordinate/Collection.pm ++++ b/lib/Bio/Coordinate/Collection.pm +@@ -367,7 +367,7 @@ are left to the calling code. + + Title : _is_sorted + Usage : $newpos = $obj->_is_sorted; +- Function: toggle for whether the (internal) coodinate mapper data are sorted ++ Function: toggle for whether the (internal) coordinate mapper data are sorted + Example : + Returns : boolean + Args : boolean +--- a/lib/Bio/Coordinate/ExtrapolatingPair.pm ++++ b/lib/Bio/Coordinate/ExtrapolatingPair.pm +@@ -180,7 +180,7 @@ can do that and set strict() to true. + Function: Map the location from the input coordinate system + to a new value in the output coordinate system. + +- In extrapolating coodinate system there is no location zero. ++ In extrapolating coordinate system there is no location zero. + Locations are... + Example : + Returns : new location in the output coordinate system or undef +--- a/lib/Bio/Coordinate/GeneMapper.pm ++++ b/lib/Bio/Coordinate/GeneMapper.pm +@@ -1004,7 +1004,7 @@ version 1.007001 + =head1 DESCRIPTION + + Bio::Coordinate::GeneMapper is a module for simplifying the mappings +-of coodinate locations between various gene related locations in human ++of coordinate locations between various gene related locations in human + genetics. It also adds a special human genetics twist to coordinate + systems by making it possible to disable the use of zero + (0). Locations before position one start from -1. See method View it on GitLab: https://salsa.debian.org/med-team/libbio-coordinate-perl/compare/d2026642f8d05b291adc7a72b8a6a096ab5f9c86...5f6162d56d2d2ee2cd6f8e5913296486174f4320 -- View it on GitLab: https://salsa.debian.org/med-team/libbio-coordinate-perl/compare/d2026642f8d05b291adc7a72b8a6a096ab5f9c86...5f6162d56d2d2ee2cd6f8e5913296486174f4320 You're receiving this email because of your account on salsa.debian.org.
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