Michael R. Crusoe pushed to branch master at Debian Med / htslib
Commits:
bc33ca5a by Michael R. Crusoe at 2018-12-05T04:46:14Z
Add libdeflate for DEFLATE based (de)compression and its crc32 implementation.
- - - - -
81e1ecba by Michael R. Crusoe at 2018-12-05T04:56:22Z
Re-add mipsel to tabix & libhts-dev as well. (Closes: #915404)
- - - - -
3 changed files:
- debian/changelog
- debian/control
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+htslib (1.9-5) unstable; urgency=medium
+
+ * Add libdeflate for DEFLATE based (de)compression and its crc32
+ implementation.
+ * Re-add mipsel to tabix & libhts-dev as well. (Closes: #915404)
+
+ -- Michael R. Crusoe <michael.cru...@gmail.com> Tue, 04 Dec 2018 20:56:12
-0800
+
htslib (1.9-4) unstable; urgency=medium
* Add Breaks: python-pysam (<< 0.15~), python3-pysam (<< 0.15~)
=====================================
debian/control
=====================================
@@ -11,7 +11,8 @@ Build-Depends: debhelper (>= 11~),
libcurl4-gnutls-dev,
liblzma-dev,
libssl-dev,
- zlib1g-dev
+ zlib1g-dev,
+ libdeflate-dev
Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/med-team/htslib
Vcs-Git: https://salsa.debian.org/med-team/htslib.git
@@ -37,7 +38,7 @@ Description: C library for high-throughput sequencing data
formats
new index and then for the old if the new index is absent.
Package: libhts-dev
-Architecture: amd64 arm64 armel armhf mips mips64el ppc64el s390x alpha hppa
ia64 kfreebsd-amd64 m68k powerpc powerpcspe ppc64 riscv64 sh4 sparc64 x32
+Architecture: amd64 arm64 armel armhf mips mips64el mipsel ppc64el s390x alpha
hppa ia64 kfreebsd-amd64 m68k powerpc powerpcspe ppc64 riscv64 sh4 sparc64 x32
Multi-Arch: same
Section: libdevel
Depends: libhts2 (= ${binary:Version}),
@@ -97,7 +98,7 @@ Description: Test data for HTSlib
This package contains test files and scripts for the HTSlib.
Package: tabix
-Architecture: amd64 arm64 armel armhf mips mips64el ppc64el s390x alpha hppa
ia64 kfreebsd-amd64 m68k powerpc powerpcspe ppc64 riscv64 sh4 sparc64 x32
+Architecture: amd64 arm64 armel armhf mips mips64el mipsel ppc64el s390x alpha
hppa ia64 kfreebsd-amd64 m68k powerpc powerpcspe ppc64 riscv64 sh4 sparc64 x32
Depends: ${misc:Depends},
${shlibs:Depends}
Description: generic indexer for TAB-delimited genome position files
=====================================
debian/rules
=====================================
@@ -20,7 +20,7 @@ override_dh_auto_configure:
# create clean copy of test dir
cp -a test test_backup
autoconf
- dh_auto_configure -- --enable-libcurl
+ dh_auto_configure -- --enable-libcurl --enable-gcs --enable-s3
override_dh_auto_build:
dh_auto_build -- \
View it on GitLab:
https://salsa.debian.org/med-team/htslib/compare/47eee749bf3f26002b56a26681ad93a895270d13...81e1ecba421cf8144072fc212f8efa5b97844a0a
--
View it on GitLab:
https://salsa.debian.org/med-team/htslib/compare/47eee749bf3f26002b56a26681ad93a895270d13...81e1ecba421cf8144072fc212f8efa5b97844a0a
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