Michael R. Crusoe pushed to branch master at Debian Med / hhsuite
Commits: d88e87c3 by Michael R. Crusoe at 2019-03-01T10:10:43Z Mark hhsuite-data as Multi-Arch: foreign - - - - - 2ba87486 by Michael R. Crusoe at 2019-03-01T10:17:39Z add missing ${perl:Depends} - - - - - bb8d63d8 by Michael R. Crusoe at 2019-03-01T10:24:17Z add new reference to 10.1101/560029 - - - - - 424fb601 by Michael R. Crusoe at 2019-03-01T10:53:24Z update copyright - - - - - 87d1893f by Michael R. Crusoe at 2019-03-01T10:53:43Z misc - - - - - 27e34bf7 by Michael R. Crusoe at 2019-03-01T10:55:44Z docs are gone - - - - - 4 changed files: - debian/changelog - debian/control - debian/copyright - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,10 +1,16 @@ hhsuite (3.1.0-1) UNRELEASED; urgency=medium + * Team upload. * New upstream release. "Added hhsearch_omp, hhsearch_mpi, hhalign_omp and haling_mpi binaries Removed non-GPLv3 compatible code ffindex_apply_mpi will not crash anymore on systems with low amount of virtual memory" + * The non-GPLv3 code was in src/hhprefilter.cpp; now gone + * Mark hhsuite-data as Multi-Arch: foreign + * Drop hhsuite-doc: documentation moved by upstream to + https://github.com/soedinglab/hh-suite/wiki + * Removed '-march=native' -- Michael R. Crusoe <michael.cru...@gmail.com> Thu, 28 Feb 2019 08:16:48 -0600 ===================================== debian/control ===================================== @@ -8,8 +8,6 @@ Priority: optional Build-Depends: debhelper (>= 11~), libffindex0-dev (>= 0.9.9.8), cmake, - texlive-latex-base, - texlive-latex-recommended, imagemagick, help2man Standards-Version: 4.3.0 @@ -21,6 +19,7 @@ Package: hhsuite Architecture: amd64 Depends: ${shlibs:Depends}, ${misc:Depends}, + ${perl:Depends}, ffindex (>= 0.9.9.8), hhsuite-data (= ${source:Version}), python @@ -46,6 +45,7 @@ Description: sensitive protein sequence searching based on HMM-HMM alignment Package: hhsuite-data Architecture: all +Multi-Arch: foreign Depends: ${misc:Depends} Description: sensitive protein sequence searching based on HMM-HMM alignment (data) HH-suite is an open-source software package for sensitive protein sequence ===================================== debian/copyright ===================================== @@ -3,12 +3,14 @@ Upstream-Name: hhsuite Upstream-Contact: Andreas Hauser <hau...@genzentrum.lmu.de> Johannes Soeding <soed...@genzentrum.lmu.de> Source: ftp://toolkit.lmb.uni-muenchen.de/HH-suite/releases/hhsuite-([0-9.]+)\.tar\.gz +File-Excluded: scripts/hhpred/ + lib/ffindex/ Files: * Copyright: 2006, 2012 Johannes Soeding 2012 Michael Remmert 2012 Andreas Hauser <hau...@genzentrum.lmu.de> - 2006, 2009, 2012 Andreas Biegert + 2006, 2009-2012 Andreas Biegert 2009-2012 Christof Angermueller License: GPL-3.0+ @@ -16,13 +18,25 @@ Files: src/cs/getopt_pp.h src/cs/getopt_pp.cc Copyright: 2007, 2008 Daniel Gutson, FuDePAN License: GPL-3.0+ +Files: src/hhprefilter.h +Copyright: 2012-2015, Boston College. +License: Expat + Files: debian/* Copyright: 2012 Laszlo Kajan <lka...@rostlab.org> + 2019 Michael R. Crusoe <michael.cru...@gmail.com> License: GPL-3.0+ +Files: cmake/xxdi.pl +Copyright: 2013, Linux Foundation + 2013, Greg Kroah-Hartman <gre...@linuxfoundation.org> +License: GPL-2 + Files: cmake/FindASan.cmake cmake/FindMSan.cmake cmake/FindTSan.cmake cmake/FindUBSan.cmake Copyright: 2013 Matthew Arsenault -License: MIT +License: Expat + +License: Expat Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights @@ -41,15 +55,6 @@ License: MIT OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. -Files: doc/UseLATEX.cmake -Copyright: 2004 Sandia Corporation -License: Sandia - Under the terms of Contract DE-AC04-94AL85000, there is a non-exclusive - license for use of this work by or on behalf of the - U.S. Government. Redistribution and use in source and binary forms, with - or without modification, are permitted provided that this Notice and any - statement of authorship are reproduced on all copies. - License: GPL-3.0+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by ===================================== debian/upstream/metadata ===================================== @@ -26,6 +26,18 @@ Reference: URL: http://bioinformatics.oxfordjournals.org/content/21/7/951.abstract eprint: "http://bioinformatics.oxfordjournals.org/content/\ 21/7/951.full.pdf+html" + - Author: > + Martin Steinegger and Markus Meier and Milot Mirdita and Harald Voehringer + and Stephan J. Haunsberger and Johannes Söding + Title: > + HH-suite3 for fast remote homology detection and deep protein + annotation + Journal: bioRxiv + publisher: Cold Spring Harbor Laboratory + Year: 2019 + DOI: 10.1101/560029 + URL: https://www.biorxiv.org/content/early/2019/02/25/560029 + eprint: https://www.biorxiv.org/content/early/2019/02/25/560029.full.pdf Registry: - Name: OMICtools Entry: OMICS_28407 View it on GitLab: https://salsa.debian.org/med-team/hhsuite/compare/4b9bf32a4f1f7fc5dcdf6c97a8d42d3d542c48e5...27e34bf7f7e5850fb280fb7e23da4fda70f88bde -- View it on GitLab: https://salsa.debian.org/med-team/hhsuite/compare/4b9bf32a4f1f7fc5dcdf6c97a8d42d3d542c48e5...27e34bf7f7e5850fb280fb7e23da4fda70f88bde You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit