Andreas Tille pushed to branch master at Debian Med / emmax
Commits: f31edd57 by Andreas Tille at 2019-03-20T20:36:59Z DEP3 - - - - - da7cdba6 by Andreas Tille at 2019-03-20T20:37:12Z spelling - - - - - 57adf98f by Andreas Tille at 2019-03-20T20:49:53Z Try to force hardening but no success to get rid of the lintian issue - - - - - deb4abd0 by Andreas Tille at 2019-03-20T20:51:07Z Upload to new - - - - - 10 changed files: - debian/changelog - debian/control - debian/patches/aborts.patch - debian/patches/clean.patch - debian/patches/dynamic.patch - + debian/patches/hardening.patch - debian/patches/install.patch - debian/patches/logfile.patch - debian/patches/paths.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,5 +1,5 @@ -emmax (0~beta.20100307-1) UNRELEASED; urgency=low +emmax (0~beta.20100307-1) unstable; urgency=low - * Initial release pending, not uploaded because of unknown license. + * Initial release (Closes: #925158) - -- Andreas Tille <ti...@debian.org> Wed, 20 Mar 2019 13:55:07 +0100 + -- Andreas Tille <ti...@debian.org> Wed, 20 Mar 2019 18:28:20 +0100 ===================================== debian/control ===================================== @@ -25,6 +25,6 @@ Description: genetic mapping considering population structure association mapping accounting for the sample structure. In addition to the computational efficiency obtained by EMMA algorithm, EMMAX takes advantage of the fact that each locus explains only a small fraction of - complex traits, which allows to avoid repetitive variance component + complex traits, which allows one to avoid repetitive variance component estimation procedure, resulting in a significant amount of increase in computational time of association mapping using mixed model. ===================================== debian/patches/aborts.patch ===================================== @@ -1,3 +1,7 @@ +Author: Steffen Moeller +Last-Update: 2013-06-11 09:09:19 +0000 +Description: Clean exit when no options are given + Index: emmax-0~beta.20100307/emmax-kin.c =================================================================== --- emmax-0~beta.20100307.orig/emmax-kin.c ===================================== debian/patches/clean.patch ===================================== @@ -1,3 +1,7 @@ +Author: Steffen Moeller +Last-Update: 2013-06-11 09:09:19 +0000 +Description: Proper cleaning + Index: emmax-0~beta.20100307/makefile =================================================================== --- emmax-0~beta.20100307.orig/makefile ===================================== debian/patches/dynamic.patch ===================================== @@ -1,3 +1,7 @@ +Author: Steffen Moeller +Last-Update: 2013-06-11 09:09:19 +0000 +Description: Dynamic linking + Index: emmax-0~beta.20100307/makefile =================================================================== --- emmax-0~beta.20100307.orig/makefile ===================================== debian/patches/hardening.patch ===================================== @@ -0,0 +1,18 @@ +Author: Andreas Tille <ti...@debian.org> +Last-Update: Wed, 20 Mar 2019 18:28:20 +0100 +Description: Propagate hardening options (unfortunately this does not help) + +--- a/makefile ++++ b/makefile +@@ -5,9 +5,9 @@ PREFIX=/usr + INCFLAGS = + LIBFLAGS = -Wall + +-COMPFLAGS = ${INCFLAGS} -O2 -Wall -g ++COMPFLAGS = ${INCFLAGS} -O2 -Wall -g $(CFLAGS) + CC = gcc +-CLIBS = -L/usr/lib/atlas-base -L/usr/lib/lapack/ -llapack_atlas -llapack -lcblas -lblas -latlas -lcblas -lm -lz ++CLIBS = -L/usr/lib/atlas-base -L/usr/lib/lapack/ -llapack_atlas -llapack -lcblas -lblas -latlas -lcblas -lm -lz $(LDFLAGS) + + all: emmax emmax-kin + ===================================== debian/patches/install.patch ===================================== @@ -1,3 +1,7 @@ +Author: Steffen Moeller +Last-Update: 2013-06-11 09:09:19 +0000 +Description: Proper install target + Index: emmax-0~beta.20100307/makefile =================================================================== --- emmax-0~beta.20100307.orig/makefile ===================================== debian/patches/logfile.patch ===================================== @@ -1,3 +1,7 @@ +Author: Steffen Moeller +Last-Update: 2013-06-11 09:09:19 +0000 +Description: Log only if file pointer exists + Index: emmax-0~beta.20100307/emmax.c =================================================================== --- emmax-0~beta.20100307.orig/emmax.c ===================================== debian/patches/paths.patch ===================================== @@ -1,3 +1,7 @@ +Author: Steffen Moeller +Last-Update: 2013-06-11 09:09:19 +0000 +Description: Fix header path of clapack.h + Index: emmax-0~beta.20100307/emmax.c =================================================================== --- emmax-0~beta.20100307.orig/emmax.c ===================================== debian/patches/series ===================================== @@ -5,3 +5,4 @@ install.patch clean.patch logfile.patch atlas.patch +hardening.patch View it on GitLab: https://salsa.debian.org/med-team/emmax/compare/8a7d9d4b55379f3db0ca6282262457148784cf77...deb4abd0220c1014a903f22930dbc21dc80bc35a -- View it on GitLab: https://salsa.debian.org/med-team/emmax/compare/8a7d9d4b55379f3db0ca6282262457148784cf77...deb4abd0220c1014a903f22930dbc21dc80bc35a You're receiving this email because of your account on salsa.debian.org.
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