Andreas Tille pushed to branch master at Debian Med / hisat2
Commits: 0b2d1a43 by Andreas Tille at 2019-08-02T16:24:04Z Fix typo - - - - - 71ce31a9 by Andreas Tille at 2019-08-02T16:26:12Z Recommends: bcftools, samtools - - - - - 2dadc91f by Andreas Tille at 2019-08-02T16:26:53Z Fix autopkgtest - - - - - 4 changed files: - debian/changelog - debian/control - debian/example → debian/examples - debian/tests/run-unit-tests Changes: ===================================== debian/changelog ===================================== @@ -2,9 +2,12 @@ hisat2 (2.1.0-4) UNRELEASED; urgency=medium * Team upload. - [Saira Hussain] + [ Saira Hussain ] * Add autopkgtest + [ Andreas Tille ] + * Recommends: bcftools, samtools + -- Saira Hussain <[email protected]> Fri, 02 Aug 2019 15:18:09 +0100 hisat2 (2.1.0-3) UNRELEASED; urgency=medium ===================================== debian/control ===================================== @@ -17,7 +17,9 @@ Architecture: amd64 kfreebsd-amd64 Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends} -Recommends: python3-hisat2 +Recommends: python3-hisat2, + bcftools, + samtools Description: graph-based alignment of short nucleotide reads to many genomes HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well ===================================== debian/example → debian/examples ===================================== ===================================== debian/tests/run-unit-tests ===================================== @@ -8,17 +8,14 @@ if [ "${AUTOPKGTEST_TMP}" = "" ] ; then # Double quote below to expand the temporary directory variable now versus # later is on purpose. # shellcheck disable=SC2064 -# trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM + trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM fi cp /usr/share/doc/${pkg}/examples/* -a "${AUTOPKGTEST_TMP}" cd "${AUTOPKGTEST_TMP}" -# Just for debugging -set -x - -cd example +gunzip -r * # Run the reproducible suite hisat2-build reference/22_20-21M.fa --snp reference/22_20-21M.snp 22_20-21M_snp View it on GitLab: https://salsa.debian.org/med-team/hisat2/compare/222893940197850cb998b97544b931b35a980cdb...2dadc91f9eef92e10ceec5f362a8ba1a0bb47791 -- View it on GitLab: https://salsa.debian.org/med-team/hisat2/compare/222893940197850cb998b97544b931b35a980cdb...2dadc91f9eef92e10ceec5f362a8ba1a0bb47791 You're receiving this email because of your account on salsa.debian.org.
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