Andreas Tille pushed to branch master at Debian Med / ragout
Commits: 30aa65fa by Andreas Tille at 2019-09-05T09:28:40Z Needs more work from upstream - - - - - 1 changed file: - debian/patches/2to3.patch Changes: ===================================== debian/patches/2to3.patch ===================================== @@ -2,6 +2,45 @@ Description: Use 2to3 to port to Python3 Bug-Debian: https://bugs.debian.org/938330 Author: Andreas Tille <[email protected]> Last-Update: Thu, 05 Sep 2019 10:06:47 +0200 +Comment: Attention: this is not fully working. The build runs into + +running build_scripts +creating build +creating build/scripts-3.7 +Traceback (most recent call last): + File "/usr/lib/python3.7/tokenize.py", line 385, in find_cookie + line_string = line.decode('utf-8') +UnicodeDecodeError: 'utf-8' codec can't decode byte 0xf0 in position 24: invalid continuation byte + +During handling of the above exception, another exception occurred: + +Traceback (most recent call last): + File "setup.py", line 43, in <module> + cmdclass={'build': MakeBuild} + File "/usr/lib/python3.7/distutils/core.py", line 148, in setup + dist.run_commands() + File "/usr/lib/python3.7/distutils/dist.py", line 966, in run_commands + self.run_command(cmd) + File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command + cmd_obj.run() + File "setup.py", line 28, in run + DistutilsBuild.run(self) + File "/usr/lib/python3.7/distutils/command/build.py", line 135, in run + self.run_command(cmd_name) + File "/usr/lib/python3.7/distutils/cmd.py", line 313, in run_command + self.distribution.run_command(command) + File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command + cmd_obj.run() + File "/usr/lib/python3.7/distutils/command/build_scripts.py", line 50, in run + self.copy_scripts() + File "/usr/lib/python3.7/distutils/command/build_scripts.py", line 82, in copy_scripts + encoding, lines = tokenize.detect_encoding(f.readline) + File "/usr/lib/python3.7/tokenize.py", line 426, in detect_encoding + encoding = find_cookie(first) + File "/usr/lib/python3.7/tokenize.py", line 390, in find_cookie + raise SyntaxError(msg) +SyntaxError: invalid or missing encoding declaration for 'bin/ragout-maf2synteny' + --- a/ragout/assembly_graph/assembly_refine.py +++ b/ragout/assembly_graph/assembly_refine.py View it on GitLab: https://salsa.debian.org/med-team/ragout/commit/30aa65fa80240464d2cbd01ed8351919f3bcfa0b -- View it on GitLab: https://salsa.debian.org/med-team/ragout/commit/30aa65fa80240464d2cbd01ed8351919f3bcfa0b You're receiving this email because of your account on salsa.debian.org.
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