Andreas Tille pushed to branch upstream at Debian Med / libbioparser-dev
Commits:
5b48657e by Andreas Tille at 2020-05-03T16:17:01+02:00
New upstream version 2.1.2
- - - - -
1 changed file:
- include/bioparser/bioparser.hpp
Changes:
=====================================
include/bioparser/bioparser.hpp
=====================================
@@ -17,7 +17,7 @@
namespace bioparser {
-static const std::string version = "v2.1.1";
+static const std::string version = "v2.1.2";
/*!
* @brief Parser absctract class
@@ -727,6 +727,11 @@ inline bool
SamParser<T>::parse(std::vector<std::unique_ptr<T>>& dst,
quality_length = 0;
auto create_T = [&] () -> void {
+ if (this->storage_[0] == '@') { // header
+ storage_ptr = 0;
+ return;
+ }
+
this->storage_[storage_ptr] = 0;
rightStrip(&(this->storage_[0]), storage_ptr);
@@ -828,11 +833,6 @@ inline bool
SamParser<T>::parse(std::vector<std::unique_ptr<T>>& dst,
for (; this->buffer_ptr_ < this->buffer_bytes_; ++this->buffer_ptr_) {
auto c = this->buffer_[this->buffer_ptr_];
if (c == '\n') {
- if (this->buffer_[begin_ptr] == '@') {
- begin_ptr = this->buffer_ptr_ + 1;
- storage_ptr = 0;
- continue;
- }
std::memcpy(&this->storage_[storage_ptr],
&this->buffer_[begin_ptr],
this->buffer_ptr_ - begin_ptr);
View it on GitLab:
https://salsa.debian.org/med-team/libbioparser-dev/-/commit/5b48657ef36c25c39c8559c7eca64b64f2de135e
--
View it on GitLab:
https://salsa.debian.org/med-team/libbioparser-dev/-/commit/5b48657ef36c25c39c8559c7eca64b64f2de135e
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