Shayan Doust pushed to branch master at Debian Med / mecat2
Commits: 7d355cd5 by Shayan Doust at 2020-06-30T13:51:50+01:00 More files to exclude - - - - - 3 changed files: - debian/copyright - debian/patches/modify_makefiles.patch - debian/rules Changes: ===================================== debian/copyright ===================================== @@ -3,10 +3,11 @@ Upstream-Name: mecat2 Source: https://github.com/xiaochuanle/MECAT2 Files-Excluded: third_party/hdf5-1.10.4.tar.gz DEXTRACTOR/* + src/ncbi_blast/* + src/fsa/* Comment: - The hdf5-1.10.4.tar.gz file in third_party/ was removed as this - already exists within the debian repository pre-packaged. DEXTRACTOR - is packaged separately. + The files listed above were removed as these + already exists within the debian repository pre-packaged. Files: * Copyright: 20xx-20yy <upstream> ===================================== debian/patches/modify_makefiles.patch ===================================== @@ -6,18 +6,25 @@ Last-Update: 2020-06-29 --- mecat2.orig/Makefile +++ mecat2/Makefile -@@ -8,47 +8,13 @@ - - BUILD_TOP_DIR := ${PWD}/${OS_TYPE}-${MACHINE_TYPE} +@@ -1,54 +1,10 @@ +-PWD := $(shell pwd) +-OS_TYPE := $(shell echo `uname`) +-MACHINE_TYPE := $(shell echo `uname -m`) +-ifeq (${MACHINE_TYPE}, x86_64) +- MACHINE_TYPE = amd64 +-endif +-BUILD_DIR := ${PWD}/${OS_TYPE}-${MACHINE_TYPE}/bin ++.PHONY: all clean mecat +-BUILD_TOP_DIR := ${PWD}/${OS_TYPE}-${MACHINE_TYPE} +- -HDF5_VERSION ?= 1.10.4 -HDF5_INSTALL = ${BUILD_TOP_DIR}/hdf5 -HDF5_SOURCE = ${BUILD_TOP_DIR}/hdf5-${HDF5_VERSION} -HDF5_INCLUDE = ${HDF5_INSTALL}/include -HDF5_LIB = ${HDF5_INSTALL}/lib/libhdf5.a -HDF5_TAR_GZ = ${BUILD_TOP_DIR}/hdf5-$(HDF5_VERSION).tar.gz -+.PHONY: all clean mecat - +- -DEXTRACTOR_BIN_NAME = dexqv dexta dextract undexqv undexta -DEXTRACTOR_BIN = $(patsubst %, ${BUILD_DIR}/%, $(DEXTRACTOR_BIN_NAME)) - ===================================== debian/rules ===================================== @@ -4,15 +4,6 @@ export LC_ALL=C.UTF-8 include /usr/share/dpkg/default.mk -# this provides: -# DEB_SOURCE: the source package name -# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision) -# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision -# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch -# DEB_VERSION_UPSTREAM: the package's upstream version -# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog -# SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as -# specified by <https://reproducible-builds.org/specs/source-date-epoch/> # for hardening you might like to uncomment this: # export DEB_BUILD_MAINT_OPTIONS=hardening=+all @@ -20,12 +11,3 @@ include /usr/share/dpkg/default.mk %: dh $@ -### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected -#override_dh_auto_test: -#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) -# do_stuff_for_testing -#endif - -### If you **really** can not use uscan (even not with mode=git) use a debian/get-orig-script -#get-orig-source: -# . debian/get-orig-source View it on GitLab: https://salsa.debian.org/med-team/mecat2/-/commit/7d355cd59f4aa20a7a96e23f8d903216155a6ef3 -- View it on GitLab: https://salsa.debian.org/med-team/mecat2/-/commit/7d355cd59f4aa20a7a96e23f8d903216155a6ef3 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit