Steffen Möller pushed to branch master at Debian Med / spades
Commits: 4172b726 by Steffen Moeller at 2020-06-24T13:26:03+02:00 Extended description to help finding metaspades - - - - - 1 changed file: - debian/control Changes: ===================================== debian/control ===================================== @@ -51,3 +51,19 @@ Description: genome assembler for single-cell and isolates data sets with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads. + . + This package provides the following additional pipelines: + * metaSPAdes – a pipeline for metagenomic data sets + * plasmidSPAdes – a pipeline for extracting and assembling plasmids + from WGS data sets + * metaplasmidSPAdes – a pipeline for extracting and assembling + plasmids from metagenomic data sets + * rnaSPAdes – a de novo transcriptome assembler from RNA-Seq data + * truSPAdes – a module for TruSeq barcode assembly + * biosyntheticSPAdes – a module for biosynthetic gene cluster + assembly with paired-end reads + . + SPAdes provides several stand-alone binaries with relatively simple + command-line interface: k-mer counting (spades-kmercounter), assembly + graph construction (spades-gbuilder) and long read to graph aligner + (spades-gmapper). View it on GitLab: https://salsa.debian.org/med-team/spades/-/commit/4172b726b5f77a72b44087aaaefd2a8951672a9f -- View it on GitLab: https://salsa.debian.org/med-team/spades/-/commit/4172b726b5f77a72b44087aaaefd2a8951672a9f You're receiving this email because of your account on salsa.debian.org.
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