Shayan Doust pushed to branch master at Debian Med / gneiss
Commits: bdad4184 by Shayan Doust at 2020-07-08T19:01:44+01:00 Initial packaging - - - - - 10 changed files: - + debian/changelog - + debian/control - + debian/copyright - + debian/rules - + debian/salsa-ci.yml - + debian/source/format - + debian/tests/control - + debian/tests/run-unit-test - + debian/upstream/metadata - + debian/watch Changes: ===================================== debian/changelog ===================================== @@ -0,0 +1,5 @@ +gneiss (0.4.6-1) UNRELEASED; urgency=medium + + * Initial release (Closes: #<bug>) + + -- Shayan Doust <he...@shayandoust.me> Wed, 08 Jul 2020 18:41:05 +0100 ===================================== debian/control ===================================== @@ -0,0 +1,19 @@ +Source: gneiss +Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> +Uploaders: Shayan Doust <he...@shayandoust.me> +Section: science +Priority: optional +Build-Depends: debhelper-compat (= 13) +Standards-Version: 4.5.0 +Vcs-Browser: https://salsa.debian.org/med-team/gneiss +Vcs-Git: https://salsa.debian.org/med-team/gneiss.git +Homepage: https://github.com/biocore/gneiss + +Package: gneiss +Architecture: any +Depends: ${shlibs:Depends}, + ${misc:Depends} +Description: data analysis and visualisation toolbox for high dimensional proportions + Canonically pronounced as 'nice', gneiss is a compositional data + analysis and visualisation toolbox designed for analysing high + dimensional proportions. ===================================== debian/copyright ===================================== @@ -0,0 +1,16 @@ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: gneiss +Source: <path_to_download> +Comment: **** Before manually editing this file you should give **** + scan-copyrights + **** available in cme + lib-config-model-dpkg-perl **** + **** package a try. For existing copyright files try **** + cme update dpkg-copyright + +Files: * +Copyright: 20xx-20yy <upstream> +License: <license> + +Files: debian/* +Copyright: 2020 Shayan Doust <he...@shayandoust.me> +License: <license> ===================================== debian/rules ===================================== @@ -0,0 +1,31 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 +export LC_ALL=C.UTF-8 + +include /usr/share/dpkg/default.mk +# this provides: +# DEB_SOURCE: the source package name +# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision) +# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision +# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch +# DEB_VERSION_UPSTREAM: the package's upstream version +# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog +# SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as +# specified by <https://reproducible-builds.org/specs/source-date-epoch/> + +# for hardening you might like to uncomment this: +# export DEB_BUILD_MAINT_OPTIONS=hardening=+all + +%: + dh $@ + +### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected +#override_dh_auto_test: +#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) +# do_stuff_for_testing +#endif + +### If you **really** can not use uscan (even not with mode=git) use a debian/get-orig-script +#get-orig-source: +# . debian/get-orig-source ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/source/format ===================================== @@ -0,0 +1 @@ +3.0 (quilt) ===================================== debian/tests/control ===================================== @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @ +Restrictions: allow-stderr ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,19 @@ +#!/bin/bash +set -e + +pkg=#PACKAGENAME# + +export LC_ALL=C.UTF-8 +if [ "${AUTOPKGTEST_TMP}" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + # Double quote below to expand the temporary directory variable now versus + # later is on purpose. + # shellcheck disable=SC2064 + trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM +fi + +cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}" + +cd "${AUTOPKGTEST_TMP}" + +#do_stuff_to_test_package# ===================================== debian/upstream/metadata ===================================== @@ -0,0 +1,15 @@ +Reference: + Author: + Title: + Journal: + Year: + Volume: + Number: + Pages: + DOI: + PMID: + URL: + eprint: +Registry: + - Name: conda:bioconda + Entry: ===================================== debian/watch ===================================== @@ -0,0 +1,4 @@ +version=4 + +opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE@-$1.tar.gz%" \ +https://github.com/biocore/gneiss/releases .*/archive/v?@ANY_VERSION@\.tar\.gz View it on GitLab: https://salsa.debian.org/med-team/gneiss/-/commit/bdad4184b738e315ad34e3dcbade89c554f2addf -- View it on GitLab: https://salsa.debian.org/med-team/gneiss/-/commit/bdad4184b738e315ad34e3dcbade89c554f2addf You're receiving this email because of your account on salsa.debian.org.
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