Steffen Möller pushed to branch master at Debian Med / bcbio
Commits: 915f9844 by Steffen Moeller at 2020-07-20T00:29:02+02:00 Updates. - - - - - 2 changed files: - debian/TODO - debian/control Changes: ===================================== debian/TODO ===================================== @@ -101,14 +101,6 @@ package libjs-scribl (rejected) A surprisingly neat JavaScript library to show genomic features Needed for DFSG-compliance of seqcluster -Package MultiQC (in crash space) (rejected from new) - https://salsa.debian.org/med-team/multiqc - Addressed https://github.com/ewels/MultiQC/issues/800 by substuting - with references to CDNs instead of local files. - The package was placed into contrib because of the dependency of its - reports on external sources. For that reason and the remote depenency - on ViennaRNA via seqcluster, also bcbio will be in contrib. - Packages just waiting for someone addressing the last mile for the upload ------------------------------------------------------------------------- ===================================== debian/control ===================================== @@ -21,33 +21,34 @@ Build-Depends: debhelper-compat (= 12), python3-psutil, python3-joblib, # for testing - atropos, - bedtools, - biobambam2, - gffread, - grabix, - hisat2, -# mosdepth, # missing - perl, - picard, - python3-biopython, - python3-cyvcf2, - python3-geneimpacts, - python3-logbook, - python3-nose, - python3-requests, - python3-pytest, - python3-pytest-mock, - bcftools, - rna-star, - salmon, - samblaster, - samtools, - seqtk, - tabix, - tophat-recondition, - wham-align, - xonsh, + atropos <!nocheck>, + bedtools <!nocheck>, + biobambam2 <!nocheck>, + gffread <!nocheck>, + grabix <!nocheck>, + hisat2 <!nocheck>, +# mosdepth <!nocheck>, # missing + multiqc <!nocheck>, + perl <!nocheck>, + picard <!nocheck>, + python3-biopython <!nocheck>, + python3-cyvcf2 <!nocheck>, + python3-geneimpacts <!nocheck>, + python3-logbook <!nocheck>, + python3-nose <!nocheck>, + python3-requests <!nocheck>, + python3-pytest <!nocheck>, + python3-pytest-mock <!nocheck>, + bcftools <!nocheck>, + rna-star <!nocheck>, + salmon <!nocheck>, + samblaster <!nocheck>, + samtools <!nocheck>, + seqtk <!nocheck>, + tabix <!nocheck>, + tophat-recondition <!nocheck>, + wham-align <!nocheck>, + xonsh <!nocheck>, # documentation python3-sphinx Standards-Version: 4.5.0 @@ -73,13 +74,15 @@ Depends: ${python3:Depends}, python3-six, python3-tornado Recommends: + multiqc, python3-arrow, python3-geneimpacts, python3-h5py, python3-pyvcf, python3-seqcluster, python3-statsmodels, - python3-tabulate + python3-tabulate, + vt Suggests: bcbio-doc, python3-bioblend, View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/commit/915f9844da6f8643b8f2bc9923dba096659eb08c -- View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/commit/915f9844da6f8643b8f2bc9923dba096659eb08c You're receiving this email because of your account on salsa.debian.org.
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