Étienne Mollier pushed to branch master at Debian Med / dialign-t
Commits: 1f07fba9 by Étienne Mollier at 2020-07-22T23:56:38+02:00 Added patch to fix FTBFS with Gcc 10 - - - - - d356dec9 by Étienne Mollier at 2020-07-23T00:05:43+02:00 Moved watch link to https:// Note however that the link to download the newer source code version is still fetched through http://. This is due to hardcoded http:// in download links. - - - - - e9ab7f06 by Étienne Mollier at 2020-07-23T00:07:16+02:00 Fixed spelling error reported by lintian - - - - - 569b6538 by Étienne Mollier at 2020-07-23T00:09:21+02:00 Added DEP3 header to gcc10.patch - - - - - 01bc98fd by Étienne Mollier at 2020-07-23T00:11:01+02:00 routine-update: Standards-Version: 4.5.0 - - - - - 0e35142a by Étienne Mollier at 2020-07-23T00:11:01+02:00 routine-update: debhelper-compat 13 - - - - - f4924f57 by Étienne Mollier at 2020-07-23T00:11:03+02:00 routine-update: Add salsa-ci file - - - - - dac90afe by Étienne Mollier at 2020-07-23T00:11:03+02:00 routine-update: Rules-Requires-Root: no - - - - - e01eb95a by Étienne Mollier at 2020-07-23T00:11:04+02:00 Use secure URI in Homepage field. Changes-By: lintian-brush Fixes: lintian: homepage-field-uses-insecure-uri See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html - - - - - bc1dad5a by Étienne Mollier at 2020-07-23T00:11:05+02:00 Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). Changes-By: lintian-brush - - - - - 725e0682 by Étienne Mollier at 2020-07-23T00:11:37+02:00 routine-update: Ready to upload to unstable - - - - - 10 changed files: - debian/README.Debian - debian/changelog - − debian/compat - debian/control - + debian/patches/gcc10.patch - debian/patches/series - + debian/salsa-ci.yml - debian/upstream/metadata - debian/watch - − source/Makefile.orig Changes: ===================================== debian/README.Debian ===================================== @@ -7,7 +7,7 @@ The configuration directory shipped with the source is installed in Possible issues with this package: - - Users have no write acces to /usr/share/dialign-tx, so problems are expected - when running dialign-t -C. + - Users have no write access to /usr/share/dialign-tx, so problems are + expected when running dialign-t -C. -- Charles Plessy <[email protected]> Fri, 04 Apr 2008 11:23:25 +0900 ===================================== debian/changelog ===================================== @@ -1,3 +1,19 @@ +dialign-t (1.0.2-13) unstable; urgency=medium + + * Team upload. + * Added patch to fix FTBFS with Gcc 10. (Closes: #957131) + * Moved watch link to https://. + * Fixed spelling error reported by lintian in README.Debian. + * Standards-Version: 4.5.0 (routine-update) + * debhelper-compat 13 (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Use secure URI in Homepage field. + * Remove obsolete field Contact from debian/upstream/metadata (already present + in machine-readable debian/copyright). + + -- Étienne Mollier <[email protected]> Thu, 23 Jul 2020 00:11:05 +0200 + dialign-t (1.0.2-12) unstable; urgency=medium [ Jelmer Vernooij ] ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -11 ===================================== debian/control ===================================== @@ -4,11 +4,12 @@ Uploaders: Charles Plessy <[email protected]>, Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 11~) -Standards-Version: 4.2.1 +Build-Depends: debhelper-compat (= 13) +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/dialign-t Vcs-Git: https://salsa.debian.org/med-team/dialign-t.git -Homepage: http://dialign-tx.gobics.de/ +Homepage: https://dialign-tx.gobics.de/ +Rules-Requires-Root: no Package: dialign-tx Architecture: any ===================================== debian/patches/gcc10.patch ===================================== @@ -0,0 +1,18 @@ +Description: fix FTBFS with Gcc 10 +Author: Étienne Mollier <[email protected]> +Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=957131 +Forwarded: no +Last-Update: 2020-07-23 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- dialign-t.orig/source/parameters.h ++++ dialign-t/source/parameters.h +@@ -138,7 +138,7 @@ + /* global variable */ + /* */ + /************************************************/ +-struct parameters* para; ++__attribute__((__common__)) struct parameters* para; + + + ===================================== debian/patches/series ===================================== @@ -4,3 +4,4 @@ consistent_declarations.patch clang-ftbfs.diff spelling.patch mayhem.patch +gcc10.patch ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/upstream/metadata ===================================== @@ -1,4 +1,3 @@ -Contact: Amarendran R. Subramanian <[email protected]> Name: DIALIGN-T Reference: AUTHOR: > ===================================== debian/watch ===================================== @@ -1,3 +1,3 @@ version=4 -http://dialign-tx.gobics.de/download http://dialign-tx.gobics.de/DIALIGN-TX_(.*)\.tar\.gz +https://dialign-tx.gobics.de/download http://dialign-tx.gobics.de/DIALIGN-TX_(.*)\.tar\.gz ===================================== source/Makefile.orig deleted ===================================== @@ -1,39 +0,0 @@ -CC=gcc -# debug -#CPPFLAGS=-g -O0 -Q -v -da -#CPPFLAGS=-g -O0 -fstack-check -Q -v -da - -#CPPFLAGS=-g -D_REENTRANT - -# THIS IS FOR THE OPTIMIZED ONE -#CPPFLAGS=-g -#CPPFLAGS=-O3 -march=i686 -funroll-loops -CPPFLAGS=-O3 -funroll-loops -march=i686 -mfpmath=sse -msse -mmmx -#CPPFLAGS=-march=athlon-mp -g -O0 -Wall -D_USE_XOPEN -D__unix__ - -OBJ_DIR=. -TARGET=. - -OBJ = \ - $(OBJ_DIR)/museq.o \ - $(OBJ_DIR)/parameters.o \ - $(OBJ_DIR)/io.o \ - $(OBJ_DIR)/diag.o \ - $(OBJ_DIR)/alig.o \ - $(OBJ_DIR)/assemble.o \ - $(OBJ_DIR)/prob.o \ - $(OBJ_DIR)/orf.o \ - $(OBJ_DIR)/translate.o \ - - -all: museq - -clean: - rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack museq dialign-tx - -museq: $(OBJ) - rm -f $(TARGET)/$@ - $(CC) -o $(TARGET)/$@ \ - $(OBJ) \ - -pipe -Wall -lm - mv museq dialign-tx View it on GitLab: https://salsa.debian.org/med-team/dialign-t/-/compare/cdca3026a12b9f3b4214b35c3542e1f37e847518...725e068229aae8a0d06466919c0d74cef2597c09 -- View it on GitLab: https://salsa.debian.org/med-team/dialign-t/-/compare/cdca3026a12b9f3b4214b35c3542e1f37e847518...725e068229aae8a0d06466919c0d74cef2597c09 You're receiving this email because of your account on salsa.debian.org.
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