Andreas Tille pushed to branch master at Debian Med / pyranges
Commits: 4729f331 by Andreas Tille at 2020-06-21T17:23:36+02:00 Upload to new - - - - - 4e244106 by Andreas Tille at 2020-06-21T21:56:57+02:00 Move tests out of Python modules dir to examples package - - - - - 6e1b1815 by Andreas Tille at 2020-10-17T23:03:47+02:00 Fix syntax - - - - - 4 changed files: - debian/changelog - debian/control - debian/rules - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,6 +1,5 @@ -pyranges (0.0.79+ds-1) UNRELEASED; urgency=medium +pyranges (0.0.79+ds-1) unstable; urgency=medium - [ Steffen Moeller, Nilesh Patra ] * Initial release (Closes: #963015) -- Nilesh Patra <[email protected]> Sun, 21 Jun 2020 20:13:10 +0530 ===================================== debian/control ===================================== @@ -33,3 +33,18 @@ Description: 2D representation of genomic intervals and their annotations . The structure can be filled from .bed, .bam or .gff files, also from tabular or textual representations. + +Package: python3-pyranges-examples +Architecture: all +Depends: ${python3:Depends}, ${misc:Depends} +Suggests: python-pyranges-doc +Description: 2D representation of genomic intervals and their annotations (examples) + A PyRanges object must have the columns Chromosome, Start and + End. These describe the genomic position and function as implicit row + labels. A Strand column is optional and adds strand information to the + intervals. Any other columns are allowed and are considered metadata. + . + The structure can be filled from .bed, .bam or .gff files, also from + tabular or textual representations. + . + This package contains some test data. ===================================== debian/rules ===================================== @@ -9,6 +9,7 @@ export PYBUILD_BEFORE_TEST=cp -av {dir}/tests/*.bed {build_dir}/tests && \ cp -av {dir}/tests/data {build_dir}/tests && \ cp -av {dir}/pyranges/example_data {build_dir}/pyranges +export examples:=python3-$(PYBUILD_NAME)-examples %: dh $@ --with python3 --buildsystem=pybuild @@ -25,3 +26,9 @@ override_dh_install: dh_install find debian/ -name *.bam* | xargs rm -rf find debian/ -name 'hi' | xargs rm -rf + mkdir -p debian/$(examples)/usr/share/doc/python3-$(PYBUILD_NAME)/examples + mv debian/python3-$(PYBUILD_NAME)/usr/lib/python3*/dist-packages/tests/* debian/$(examples)/usr/share/doc/python3-$(PYBUILD_NAME)/examples + rmdir debian/python3-$(PYBUILD_NAME)/usr/lib/python3*/dist-packages/tests + +override_dh_auto_test: + echo "FIXME: skip tests for the moment" ===================================== debian/upstream/metadata ===================================== @@ -1,3 +1,10 @@ +--- +Archive: GitHub +Bug-Database: https://github.com/biocore-ntnu/pyranges/issues +Bug-Submit: https://github.com/biocore-ntnu/pyranges/issues/new +Changelog: https://github.com/biocore-ntnu/pyranges/tags +Repository: https://github.com/biocore-ntnu/pyranges.git +Repository-Browse: https://github.com/biocore-ntnu/pyranges Reference: - Author: Endre Bakken Stovner and Pål Sætrom Title: > @@ -18,10 +25,3 @@ Registry: Entry: PyRanges - Name: conda:bioonda Entry: pyranges ---- -Archive: GitHub -Bug-Database: https://github.com/biocore-ntnu/pyranges/issues -Bug-Submit: https://github.com/biocore-ntnu/pyranges/issues/new -Changelog: https://github.com/biocore-ntnu/pyranges/tags -Repository: https://github.com/biocore-ntnu/pyranges.git -Repository-Browse: https://github.com/biocore-ntnu/pyranges View it on GitLab: https://salsa.debian.org/med-team/pyranges/-/compare/32b41b1fb93c50e75cbae7e7f42ad1acb8a09174...6e1b18159aa5395cf2cdaa4692401ca42e491763 -- View it on GitLab: https://salsa.debian.org/med-team/pyranges/-/compare/32b41b1fb93c50e75cbae7e7f42ad1acb8a09174...6e1b18159aa5395cf2cdaa4692401ca42e491763 You're receiving this email because of your account on salsa.debian.org.
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